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Page 1
p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) Analyses.
Hünten S, Kaller M, Drepper F, Oeljeklaus S, Bonfert T, Erhard F, Dueck A, Eichner N, Friedel CC, Meister G, Zimmer R, Warscheid B, Hermeking H. Hünten S, et al. Among authors: bonfert t. Mol Cell Proteomics. 2015 Oct;14(10):2609-29. doi: 10.1074/mcp.M115.050237. Epub 2015 Jul 16. Mol Cell Proteomics. 2015. PMID: 26183718 Free PMC article.
Mining RNA-seq data for infections and contaminations.
Bonfert T, Csaba G, Zimmer R, Friedel CC. Bonfert T, et al. PLoS One. 2013 Sep 3;8(9):e73071. doi: 10.1371/journal.pone.0073071. eCollection 2013. PLoS One. 2013. PMID: 24019895 Free PMC article.
Prediction of Poly(A) Sites by Poly(A) Read Mapping.
Bonfert T, Friedel CC. Bonfert T, et al. PLoS One. 2017 Jan 30;12(1):e0170914. doi: 10.1371/journal.pone.0170914. eCollection 2017. PLoS One. 2017. PMID: 28135292 Free PMC article.
Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution.
Windhager L, Bonfert T, Burger K, Ruzsics Z, Krebs S, Kaufmann S, Malterer G, L'Hernault A, Schilhabel M, Schreiber S, Rosenstiel P, Zimmer R, Eick D, Friedel CC, Dölken L. Windhager L, et al. Among authors: bonfert t. Genome Res. 2012 Oct;22(10):2031-42. doi: 10.1101/gr.131847.111. Epub 2012 Apr 26. Genome Res. 2012. PMID: 22539649 Free PMC article.
Real-time transcriptional profiling of cellular and viral gene expression during lytic cytomegalovirus infection.
Marcinowski L, Lidschreiber M, Windhager L, Rieder M, Bosse JB, Rädle B, Bonfert T, Györy I, de Graaf M, Prazeres da Costa O, Rosenstiel P, Friedel CC, Zimmer R, Ruzsics Z, Dölken L. Marcinowski L, et al. Among authors: bonfert t. PLoS Pathog. 2012 Sep;8(9):e1002908. doi: 10.1371/journal.ppat.1002908. Epub 2012 Sep 6. PLoS Pathog. 2012. PMID: 22969428 Free PMC article.
Widespread disruption of host transcription termination in HSV-1 infection.
Rutkowski AJ, Erhard F, L'Hernault A, Bonfert T, Schilhabel M, Crump C, Rosenstiel P, Efstathiou S, Zimmer R, Friedel CC, Dölken L. Rutkowski AJ, et al. Among authors: bonfert t. Nat Commun. 2015 May 20;6:7126. doi: 10.1038/ncomms8126. Nat Commun. 2015. PMID: 25989971 Free PMC article.