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LTR-mediated retroposition as a mechanism of RNA-based duplication in metazoans.
Tan S, Cardoso-Moreira M, Shi W, Zhang D, Huang J, Mao Y, Jia H, Zhang Y, Chen C, Shao Y, Leng L, Liu Z, Huang X, Long M, Zhang YE. Tan S, et al. Among authors: chen c. Genome Res. 2016 Dec;26(12):1663-1675. doi: 10.1101/gr.204925.116. Epub 2016 Oct 20. Genome Res. 2016. PMID: 27934698 Free PMC article.
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits.
Chen L, Qiu Q, Jiang Y, Wang K, Lin Z, Li Z, Bibi F, Yang Y, Wang J, Nie W, Su W, Liu G, Li Q, Fu W, Pan X, Liu C, Yang J, Zhang C, Yin Y, Wang Y, Zhao Y, Zhang C, Wang Z, Qin Y, Liu W, Wang B, Ren Y, Zhang R, Zeng Y, da Fonseca RR, Wei B, Li R, Wan W, Zhao R, Zhu W, Wang Y, Duan S, Gao Y, Zhang YE, Chen C, Hvilsom C, Epps CW, Chemnick LG, Dong Y, Mirarab S, Siegismund HR, Ryder OA, Gilbert MTP, Lewin HA, Zhang G, Heller R, Wang W. Chen L, et al. Among authors: chen c. Science. 2019 Jun 21;364(6446):eaav6202. doi: 10.1126/science.aav6202. Science. 2019. PMID: 31221828
Gene expression across mammalian organ development.
Cardoso-Moreira M, Halbert J, Valloton D, Velten B, Chen C, Shao Y, Liechti A, Ascenção K, Rummel C, Ovchinnikova S, Mazin PV, Xenarios I, Harshman K, Mort M, Cooper DN, Sandi C, Soares MJ, Ferreira PG, Afonso S, Carneiro M, Turner JMA, VandeBerg JL, Fallahshahroudi A, Jensen P, Behr R, Lisgo S, Lindsay S, Khaitovich P, Huber W, Baker J, Anders S, Zhang YE, Kaessmann H. Cardoso-Moreira M, et al. Among authors: chen c. Nature. 2019 Jul;571(7766):505-509. doi: 10.1038/s41586-019-1338-5. Epub 2019 Jun 26. Nature. 2019. PMID: 31243369 Free PMC article.
Genome-wide analysis of pseudogenes reveals HBBP1's human-specific essentiality in erythropoiesis and implication in β-thalassemia.
Ma Y, Liu S, Gao J, Chen C, Zhang X, Yuan H, Chen Z, Yin X, Sun C, Mao Y, Zhou F, Shao Y, Liu Q, Xu J, Cheng L, Yu D, Li P, Yi P, He J, Geng G, Guo Q, Si Y, Zhao H, Li H, Banes GL, Liu H, Nakamura Y, Kurita R, Huang Y, Wang X, Wang F, Fang G, Engel JD, Shi L, Zhang YE, Yu J. Ma Y, et al. Among authors: chen z, chen c. Dev Cell. 2021 Feb 22;56(4):478-493.e11. doi: 10.1016/j.devcel.2020.12.019. Epub 2021 Jan 20. Dev Cell. 2021. PMID: 33476555 Free article.
The evolution of ancestral and species-specific adaptations in snowfinches at the Qinghai-Tibet Plateau.
Qu Y, Chen C, Chen X, Hao Y, She H, Wang M, Ericson PGP, Lin H, Cai T, Song G, Jia C, Chen C, Zhang H, Li J, Liang L, Wu T, Zhao J, Gao Q, Zhang G, Zhai W, Zhang C, Zhang YE, Lei F. Qu Y, et al. Among authors: chen c, chen x. Proc Natl Acad Sci U S A. 2021 Mar 30;118(13):e2012398118. doi: 10.1073/pnas.2012398118. Proc Natl Acad Sci U S A. 2021. PMID: 33753478 Free PMC article.
Genomic analyses of new genes and their phenotypic effects reveal rapid evolution of essential functions in Drosophila development.
Xia S, VanKuren NW, Chen C, Zhang L, Kemkemer C, Shao Y, Jia H, Lee U, Advani AS, Gschwend A, Vibranovski MD, Chen S, Zhang YE, Long M. Xia S, et al. Among authors: chen c, chen s. PLoS Genet. 2021 Jul 9;17(7):e1009654. doi: 10.1371/journal.pgen.1009654. eCollection 2021 Jul. PLoS Genet. 2021. PMID: 34242211 Free PMC article.
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