Madan S - Search Results

1

Construction of biological networks from unstructured information based on a semi-automated curation workflow.

Szostak J, Ansari S, Madan S, Fluck J, Talikka M, Iskandar A, De Leon H, Hofmann-Apitius M, Peitsch MC, Hoeng J. Szostak J, et al. Among authors: madan s. Database (Oxford). 2015 Jun 17;2015:bav057. doi: 10.1093/database/bav057. Database (Oxford). 2015. PMID: 26200752 Free PMC article.

2

BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language.

Rinaldi F, Ellendorff TR, Madan S, Clematide S, van der Lek A, Mevissen T, Fluck J. Rinaldi F, et al. Among authors: madan s. Database (Oxford). 2016 Jul 9;2016:baw067. doi: 10.1093/database/baw067. Print 2016. Database (Oxford). 2016. PMID: 27402677 Free PMC article.

3

Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL).

Fluck J, Madan S, Ansari S, Kodamullil AT, Karki R, Rastegar-Mojarad M, Catlett NL, Hayes W, Szostak J, Hoeng J, Peitsch M. Fluck J, et al. Among authors: madan s. Database (Oxford). 2016 Aug 23;2016:baw113. doi: 10.1093/database/baw113. Print 2016. Database (Oxford). 2016. PMID: 27554092 Free PMC article.

4

Overview of the interactive task in BioCreative V.

Wang Q, S Abdul S, Almeida L, Ananiadou S, Balderas-Martínez YI, Batista-Navarro R, Campos D, Chilton L, Chou HJ, Contreras G, Cooper L, Dai HJ, Ferrell B, Fluck J, Gama-Castro S, George N, Gkoutos G, Irin AK, Jensen LJ, Jimenez S, Jue TR, Keseler I, Madan S, Matos S, McQuilton P, Milacic M, Mort M, Natarajan J, Pafilis E, Pereira E, Rao S, Rinaldi F, Rothfels K, Salgado D, Silva RM, Singh O, Stefancsik R, Su CH, Subramani S, Tadepally HD, Tsaprouni L, Vasilevsky N, Wang X, Chatr-Aryamontri A, Laulederkind SJ, Matis-Mitchell S, McEntyre J, Orchard S, Pundir S, Rodriguez-Esteban R, Van Auken K, Lu Z, Schaeffer M, Wu CH, Hirschman L, Arighi CN. Wang Q, et al. Among authors: s abdul s, madan s. Database (Oxford). 2016 Sep 1;2016:baw119. doi: 10.1093/database/baw119. Print 2016. Database (Oxford). 2016. PMID: 27589961 Free PMC article.

5

The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track.

Madan S, Hodapp S, Senger P, Ansari S, Szostak J, Hoeng J, Peitsch M, Fluck J. Madan S, et al. Database (Oxford). 2016 Oct 2;2016:baw136. doi: 10.1093/database/baw136. Print 2016. Database (Oxford). 2016. PMID: 27694210 Free PMC article.

6

Of Mice and Men: Comparative Analysis of Neuro-Inflammatory Mechanisms in Human and Mouse Using Cause-and-Effect Models.

Kodamullil AT, Iyappan A, Karki R, Madan S, Younesi E, Hofmann-Apitius M. Kodamullil AT, et al. Among authors: madan s. J Alzheimers Dis. 2017;59(3):1045-1055. doi: 10.3233/JAD-170255. J Alzheimers Dis. 2017. PMID: 28731442 Free PMC article. Review.

7

SEAweb: the small RNA Expression Atlas web application.

Rahman RU, Liebhoff AM, Bansal V, Fiosins M, Rajput A, Sattar A, Magruder DS, Madan S, Sun T, Gautam A, Heins S, Liwinski T, Bethune J, Trenkwalder C, Fluck J, Mollenhauer B, Bonn S. Rahman RU, et al. Among authors: madan s. Nucleic Acids Res. 2020 Jan 8;48(D1):D204-D219. doi: 10.1093/nar/gkz869. Nucleic Acids Res. 2020. PMID: 31598718 Free PMC article.

8

The extraction of complex relationships and their conversion to biological expression language (BEL) overview of the BioCreative VI (2017) BEL track.

Madan S, Szostak J, Komandur Elayavilli R, Tsai RT, Ali M, Qian L, Rastegar-Mojarad M, Hoeng J, Fluck J. Madan S, et al. Database (Oxford). 2019 Jan 1;2019:baz084. doi: 10.1093/database/baz084. Database (Oxford). 2019. PMID: 31603193 Free PMC article.

9

Systems Toxicology Approach for Testing Chemical Cardiotoxicity in Larval Zebrafish.

Li R, Zupanic A, Talikka M, Belcastro V, Madan S, Dörpinghaus J, Berg CV, Szostak J, Martin F, Peitsch MC, Hoeng J. Li R, et al. Among authors: madan s. Chem Res Toxicol. 2020 Oct 19;33(10):2550-2564. doi: 10.1021/acs.chemrestox.0c00095. Epub 2020 Jul 24. Chem Res Toxicol. 2020. PMID: 32638588 Free article.

10

Data-Driven Modeling of Knowledge Assemblies in Understanding Comorbidity Between Type 2 Diabetes Mellitus and Alzheimer's Disease.

Karki R, Madan S, Gadiya Y, Domingo-Fernández D, Kodamullil AT, Hofmann-Apitius M. Karki R, et al. Among authors: madan s. J Alzheimers Dis. 2020;78(1):87-95. doi: 10.3233/JAD-200752. J Alzheimers Dis. 2020. PMID: 32925069 Free PMC article.

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