Kanitz A - Search Results

1

Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data.

Kanitz A, Gypas F, Gruber AJ, Gruber AR, Martin G, Zavolan M. Kanitz A, et al. Genome Biol. 2015 Jul 23;16(1):150. doi: 10.1186/s13059-015-0702-5. Genome Biol. 2015. PMID: 26201343 Free PMC article.

2

Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system.

Galgano A, Forrer M, Jaskiewicz L, Kanitz A, Zavolan M, Gerber AP. Galgano A, et al. Among authors: kanitz a. PLoS One. 2008 Sep 8;3(9):e3164. doi: 10.1371/journal.pone.0003164. PLoS One. 2008. PMID: 18776931 Free PMC article.

3

RNA splicing and its connection with other regulatory layers in somatic cell reprogramming.

Zavolan M, Kanitz A. Zavolan M, et al. Among authors: kanitz a. Curr Opin Cell Biol. 2018 Jun;52:8-13. doi: 10.1016/j.ceb.2017.12.002. Epub 2017 Dec 21. Curr Opin Cell Biol. 2018. PMID: 29275148 Review.

4

Conserved regulation of RNA processing in somatic cell reprogramming.

Kanitz A, Syed AP, Kaji K, Zavolan M. Kanitz A, et al. BMC Genomics. 2019 Jan 31;20(1):100. doi: 10.1186/s12864-019-5438-2. BMC Genomics. 2019. PMID: 30704403 Free PMC article.

5

MINA-1 and WAGO-4 are part of regulatory network coordinating germ cell death and RNAi in C. elegans.

Sendoel A, Subasic D, Ducoli L, Keller M, Michel E, Kohler I, Singh KD, Zheng X, Brümmer A, Imig J, Kishore S, Wu Y, Kanitz A, Kaech A, Mittal N, Matia-González AM, Gerber AP, Zavolan M, Aebersold R, Hall J, Allain FH, Hengartner MO. Sendoel A, et al. Among authors: kanitz a. Cell Death Differ. 2019 Oct;26(10):2157-2178. doi: 10.1038/s41418-019-0291-z. Epub 2019 Feb 6. Cell Death Differ. 2019. PMID: 30728462 Free PMC article.

6

PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3' end sequencing.

Herrmann CJ, Schmidt R, Kanitz A, Artimo P, Gruber AJ, Zavolan M. Herrmann CJ, et al. Among authors: kanitz a. Nucleic Acids Res. 2020 Jan 8;48(D1):D174-D179. doi: 10.1093/nar/gkz918. Nucleic Acids Res. 2020. PMID: 31617559 Free PMC article.

7

Untargeted sequencing of circulating microRNAs in a healthy and diseased older population.

Streese L, Demougin P, Iborra P, Kanitz A, Deiseroth A, Kröpfl JM, Schmidt-Trucksäss A, Zavolan M, Hanssen H. Streese L, et al. Among authors: kanitz a. Sci Rep. 2022 Feb 22;12(1):2991. doi: 10.1038/s41598-022-06956-4. Sci Rep. 2022. PMID: 35194110 Free PMC article.

8

CFIm-mediated alternative polyadenylation remodels cellular signaling and miRNA biogenesis.

Ghosh S, Ataman M, Bak M, Börsch A, Schmidt A, Buczak K, Martin G, Dimitriades B, Herrmann CJ, Kanitz A, Zavolan M. Ghosh S, et al. Among authors: kanitz a. Nucleic Acids Res. 2022 Apr 8;50(6):3096-3114. doi: 10.1093/nar/gkac114. Nucleic Acids Res. 2022. PMID: 35234914 Free PMC article.

9

Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data.

Bryce-Smith S, Burri D, Gazzara MR, Herrmann CJ, Danecka W, Fitzsimmons CM, Wan YK, Zhuang F, Fansler MM, Fernández JM, Ferret M, Gonzalez-Uriarte A, Haynes S, Herdman C, Kanitz A, Katsantoni M, Marini F, McDonnel E, Nicolet B, Poon CL, Rot G, Schärfen L, Wu PJ, Yoon Y, Barash Y, Zavolan M. Bryce-Smith S, et al. Among authors: kanitz a. RNA. 2023 Dec;29(12):1839-1855. doi: 10.1261/rna.079849.123. Epub 2023 Oct 10. RNA. 2023. PMID: 37816550 Free PMC article. Review.

10

Tandem RNA isolation reveals functional rearrangement of RNA-binding proteins on CDKN1B/p27^Kip1 3'UTRs in cisplatin treated cells.

Iadevaia V, Wouters MD, Kanitz A, Matia-González AM, Laing EE, Gerber AP. Iadevaia V, et al. Among authors: kanitz a. RNA Biol. 2020 Jan;17(1):33-46. doi: 10.1080/15476286.2019.1662268. Epub 2019 Sep 16. RNA Biol. 2020. PMID: 31522610 Free PMC article.

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