Kim DE - Search Results

1

Large-scale determination of previously unsolved protein structures using evolutionary information.

Ovchinnikov S, Kinch L, Park H, Liao Y, Pei J, Kim DE, Kamisetty H, Grishin NV, Baker D. Ovchinnikov S, et al. Among authors: kim de. Elife. 2015 Sep 3;4:e09248. doi: 10.7554/eLife.09248. Elife. 2015. PMID: 26335199 Free PMC article.

2

Contrasting roles for symmetrically disposed beta-turns in the folding of a small protein.

Gu H, Kim D, Baker D. Gu H, et al. J Mol Biol. 1997 Dec 12;274(4):588-96. doi: 10.1006/jmbi.1997.1374. J Mol Biol. 1997. PMID: 9417937

3

The sequences of small proteins are not extensively optimized for rapid folding by natural selection.

Kim DE, Gu H, Baker D. Kim DE, et al. Proc Natl Acad Sci U S A. 1998 Apr 28;95(9):4982-6. doi: 10.1073/pnas.95.9.4982. Proc Natl Acad Sci U S A. 1998. PMID: 9560214 Free PMC article.

4

The single helix in protein L is largely disrupted at the rate-limiting step in folding.

Kim DE, Yi Q, Gladwin ST, Goldberg JM, Baker D. Kim DE, et al. J Mol Biol. 1998 Dec 4;284(3):807-15. doi: 10.1006/jmbi.1998.2200. J Mol Biol. 1998. PMID: 9826517

5

Robustness of protein folding kinetics to surface hydrophobic substitutions.

Gu H, Doshi N, Kim DE, Simons KT, Santiago JV, Nauli S, Baker D. Gu H, et al. Among authors: kim de. Protein Sci. 1999 Dec;8(12):2734-41. doi: 10.1110/ps.8.12.2734. Protein Sci. 1999. PMID: 10631990 Free PMC article.

6

Crystallization and preliminary X-ray diffraction studies of mutants of B1 IgG-binding domain of protein L from Peptostreptococcus magnus.

Johnsen K, O'Neill JW, Kim DE, Baker D, Zhang KY. Johnsen K, et al. Among authors: kim de. Acta Crystallogr D Biol Crystallogr. 2000 Apr;56(Pt 4):506-8. doi: 10.1107/s0907444900002195. Acta Crystallogr D Biol Crystallogr. 2000. PMID: 10739935

7

A breakdown of symmetry in the folding transition state of protein L.

Kim DE, Fisher C, Baker D. Kim DE, et al. J Mol Biol. 2000 May 19;298(5):971-84. doi: 10.1006/jmbi.2000.3701. J Mol Biol. 2000. PMID: 10801362

8

Structures of the B1 domain of protein L from Peptostreptococcus magnus with a tyrosine to tryptophan substitution.

O'Neill JW, Kim DE, Baker D, Zhang KY. O'Neill JW, et al. Among authors: kim de. Acta Crystallogr D Biol Crystallogr. 2001 Apr;57(Pt 4):480-7. doi: 10.1107/s0907444901000373. Acta Crystallogr D Biol Crystallogr. 2001. PMID: 11264576

9

Conversion of monomeric protein L to an obligate dimer by computational protein design.

Kuhlman B, O'Neill JW, Kim DE, Zhang KY, Baker D. Kuhlman B, et al. Among authors: kim de. Proc Natl Acad Sci U S A. 2001 Sep 11;98(19):10687-91. doi: 10.1073/pnas.181354398. Epub 2001 Aug 28. Proc Natl Acad Sci U S A. 2001. PMID: 11526208 Free PMC article.

10

Single-site mutations induce 3D domain swapping in the B1 domain of protein L from Peptostreptococcus magnus.

O'Neill JW, Kim DE, Johnsen K, Baker D, Zhang KY. O'Neill JW, et al. Among authors: kim de. Structure. 2001 Nov;9(11):1017-27. doi: 10.1016/s0969-2126(01)00667-0. Structure. 2001. PMID: 11709166 Free article.

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