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Chromosomal copy number variation reveals differential levels of genomic plasticity in distinct Trypanosoma cruzi strains.
Reis-Cunha JL, Rodrigues-Luiz GF, Valdivia HO, Baptista RP, Mendes TA, de Morais GL, Guedes R, Macedo AM, Bern C, Gilman RH, Lopez CT, Andersson B, Vasconcelos AT, Bartholomeu DC. Reis-Cunha JL, et al. Among authors: baptista rp. BMC Genomics. 2015 Jul 4;16(1):499. doi: 10.1186/s12864-015-1680-4. BMC Genomics. 2015. PMID: 26141959 Free PMC article.
Whole genome sequencing of Trypanosoma cruzi field isolates reveals extensive genomic variability and complex aneuploidy patterns within TcII DTU.
Reis-Cunha JL, Baptista RP, Rodrigues-Luiz GF, Coqueiro-Dos-Santos A, Valdivia HO, de Almeida LV, Cardoso MS, D'Ávila DA, Dias FHC, Fujiwara RT, Galvão LMC, Chiari E, Cerqueira GC, Bartholomeu DC. Reis-Cunha JL, et al. Among authors: baptista rp. BMC Genomics. 2018 Nov 13;19(1):816. doi: 10.1186/s12864-018-5198-4. BMC Genomics. 2018. PMID: 30424726 Free PMC article.
Accessing the Variability of Multicopy Genes in Complex Genomes using Unassembled Next-Generation Sequencing Reads: The Case of Trypanosoma cruzi Multigene Families.
Reis-Cunha JL, Coqueiro-Dos-Santos A, Pimenta-Carvalho SA, Marques LP, Rodrigues-Luiz GF, Baptista RP, Almeida LV, Honorato NRM, Lobo FP, Fraga VG, Galvão LMDC, Bueno LL, Fujiwara RT, Cardoso MS, Cerqueira GC, Bartholomeu DC. Reis-Cunha JL, et al. Among authors: baptista rp. mBio. 2022 Dec 20;13(6):e0231922. doi: 10.1128/mbio.02319-22. Epub 2022 Oct 20. mBio. 2022. PMID: 36264102 Free PMC article.
Long-read assembly and comparative evidence-based reanalysis of Cryptosporidium genome sequences reveal expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions.
Baptista RP, Li Y, Sateriale A, Sanders MJ, Brooks KL, Tracey A, Ansell BRE, Jex AR, Cooper GW, Smith ED, Xiao R, Dumaine JE, Georgeson P, Pope BJ, Berriman M, Striepen B, Cotton JA, Kissinger JC. Baptista RP, et al. Genome Res. 2022 Jan;32(1):203-213. doi: 10.1101/gr.275325.121. Epub 2021 Nov 11. Genome Res. 2022. PMID: 34764149 Free PMC article.
Challenges for Cryptosporidium Population Studies.
Baptista RP, Cooper GW, Kissinger JC. Baptista RP, et al. Genes (Basel). 2021 Jun 10;12(6):894. doi: 10.3390/genes12060894. Genes (Basel). 2021. PMID: 34200631 Free PMC article. Review.
66 results