Thorpe MF - Search Results

1

Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways.

Seyler SL, Kumar A, Thorpe MF, Beckstein O. Seyler SL, et al. Among authors: thorpe mf. PLoS Comput Biol. 2015 Oct 21;11(10):e1004568. doi: 10.1371/journal.pcbi.1004568. eCollection 2015 Oct. PLoS Comput Biol. 2015. PMID: 26488417 Free PMC article.

2

Partial unfolding and refolding for structure refinement: A unified approach of geometric simulations and molecular dynamics.

Kumar A, Campitelli P, Thorpe MF, Ozkan SB. Kumar A, et al. Among authors: thorpe mf. Proteins. 2015 Dec;83(12):2279-92. doi: 10.1002/prot.24947. Epub 2015 Nov 17. Proteins. 2015. PMID: 26476100 Free PMC article.

3

Correction: Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways.

Seyler SL, Kumar A, Thorpe MF, Beckstein O. Seyler SL, et al. Among authors: thorpe mf. PLoS Comput Biol. 2019 Jun 17;15(6):e1007136. doi: 10.1371/journal.pcbi.1007136. eCollection 2019 Jun. PLoS Comput Biol. 2019. PMID: 31206513 Free PMC article.

4

Amorphous graphene: a realization of Zachariasen's glass.

Kumar A, Wilson M, Thorpe MF. Kumar A, et al. Among authors: thorpe mf. J Phys Condens Matter. 2012 Dec 5;24(48):485003. doi: 10.1088/0953-8984/24/48/485003. Epub 2012 Oct 23. J Phys Condens Matter. 2012. PMID: 23090073

5

Rigidity loss in disordered systems: three scenarios.

Ellenbroek WG, Hagh VF, Kumar A, Thorpe MF, van Hecke M. Ellenbroek WG, et al. Among authors: thorpe mf. Phys Rev Lett. 2015 Apr 3;114(13):135501. doi: 10.1103/PhysRevLett.114.135501. Epub 2015 Apr 1. Phys Rev Lett. 2015. PMID: 25884127

6

Ring statistics of silica bilayers.

Kumar A, Sherrington D, Wilson M, Thorpe MF. Kumar A, et al. Among authors: thorpe mf. J Phys Condens Matter. 2014 Oct 1;26(39):395401. doi: 10.1088/0953-8984/26/39/395401. Epub 2014 Sep 5. J Phys Condens Matter. 2014. PMID: 25191795

7

Collective dynamics differentiates functional divergence in protein evolution.

Glembo TJ, Farrell DW, Gerek ZN, Thorpe MF, Ozkan SB. Glembo TJ, et al. Among authors: thorpe mf. PLoS Comput Biol. 2012;8(3):e1002428. doi: 10.1371/journal.pcbi.1002428. Epub 2012 Mar 29. PLoS Comput Biol. 2012. PMID: 22479170 Free PMC article.

8

Comparison of pathways from the geometric targeting method and targeted molecular dynamics in nitrogen regulatory protein C.

Farrell DW, Lei M, Thorpe MF. Farrell DW, et al. Among authors: thorpe mf. Phys Biol. 2011 Apr;8(2):026017. doi: 10.1088/1478-3975/8/2/026017. Epub 2011 Apr 6. Phys Biol. 2011. PMID: 21471637

9

Generating stereochemically acceptable protein pathways.

Farrell DW, Speranskiy K, Thorpe MF. Farrell DW, et al. Among authors: thorpe mf. Proteins. 2010 Nov 1;78(14):2908-21. doi: 10.1002/prot.22810. Proteins. 2010. PMID: 20715289

10

Hierarchical plasticity from pair distance fluctuations.

Menor SA, de Graff AM, Thorpe MF. Menor SA, et al. Among authors: thorpe mf. Phys Biol. 2009 Jul 14;6(3):036017. doi: 10.1088/1478-3975/6/3/036017. Phys Biol. 2009. PMID: 19597264

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