Brinkman FS - Search Results

1

Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities.

Peabody MA, Van Rossum T, Lo R, Brinkman FS. Peabody MA, et al. Among authors: brinkman fs. BMC Bioinformatics. 2015 Nov 4;16:363. doi: 10.1186/s12859-015-0788-5. BMC Bioinformatics. 2015. PMID: 26537885 Free PMC article.

2

Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation.

Winsor GL, Lo R, Ho Sui SJ, Ung KS, Huang S, Cheng D, Ching WK, Hancock RE, Brinkman FS. Winsor GL, et al. Among authors: brinkman fs. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D338-43. doi: 10.1093/nar/gki047. Nucleic Acids Res. 2005. PMID: 15608211 Free PMC article.

3

Assessing the precision of high-throughput computational and laboratory approaches for the genome-wide identification of protein subcellular localization in bacteria.

Rey S, Gardy JL, Brinkman FS. Rey S, et al. Among authors: brinkman fs. BMC Genomics. 2005 Nov 17;6:162. doi: 10.1186/1471-2164-6-162. BMC Genomics. 2005. PMID: 16288665 Free PMC article.

4

Improving the specificity of high-throughput ortholog prediction.

Fulton DL, Li YY, Laird MR, Horsman BG, Roche FM, Brinkman FS. Fulton DL, et al. Among authors: brinkman fs. BMC Bioinformatics. 2006 May 28;7:270. doi: 10.1186/1471-2105-7-270. BMC Bioinformatics. 2006. PMID: 16729895 Free PMC article.

5

Evaluation of genomic island predictors using a comparative genomics approach.

Langille MG, Hsiao WW, Brinkman FS. Langille MG, et al. Among authors: brinkman fs. BMC Bioinformatics. 2008 Aug 5;9:329. doi: 10.1186/1471-2105-9-329. BMC Bioinformatics. 2008. PMID: 18680607 Free PMC article.

6

InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

Lynn DJ, Winsor GL, Chan C, Richard N, Laird MR, Barsky A, Gardy JL, Roche FM, Chan TH, Shah N, Lo R, Naseer M, Que J, Yau M, Acab M, Tulpan D, Whiteside MD, Chikatamarla A, Mah B, Munzner T, Hokamp K, Hancock RE, Brinkman FS. Lynn DJ, et al. Among authors: brinkman fs. Mol Syst Biol. 2008;4:218. doi: 10.1038/msb.2008.55. Epub 2008 Sep 2. Mol Syst Biol. 2008. PMID: 18766178 Free PMC article.

7

The Burkholderia Genome Database: facilitating flexible queries and comparative analyses.

Winsor GL, Khaira B, Van Rossum T, Lo R, Whiteside MD, Brinkman FS. Winsor GL, et al. Among authors: brinkman fs. Bioinformatics. 2008 Dec 1;24(23):2803-4. doi: 10.1093/bioinformatics/btn524. Epub 2008 Oct 7. Bioinformatics. 2008. PMID: 18842600 Free PMC article.

8

Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes.

Winsor GL, Van Rossum T, Lo R, Khaira B, Whiteside MD, Hancock RE, Brinkman FS. Winsor GL, et al. Among authors: brinkman fs. Nucleic Acids Res. 2009 Jan;37(Database issue):D483-8. doi: 10.1093/nar/gkn861. Epub 2008 Oct 31. Nucleic Acids Res. 2009. PMID: 18978025 Free PMC article.

9

IslandViewer: an integrated interface for computational identification and visualization of genomic islands.

Langille MG, Brinkman FS. Langille MG, et al. Among authors: brinkman fs. Bioinformatics. 2009 Mar 1;25(5):664-5. doi: 10.1093/bioinformatics/btp030. Epub 2009 Jan 16. Bioinformatics. 2009. PMID: 19151094 Free PMC article.

10

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.

Yu NY, Wagner JR, Laird MR, Melli G, Rey S, Lo R, Dao P, Sahinalp SC, Ester M, Foster LJ, Brinkman FS. Yu NY, et al. Among authors: brinkman fs. Bioinformatics. 2010 Jul 1;26(13):1608-15. doi: 10.1093/bioinformatics/btq249. Epub 2010 May 13. Bioinformatics. 2010. PMID: 20472543 Free PMC article.

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