Hara Y - Search Results

1

Optimizing and benchmarking de novo transcriptome sequencing: from library preparation to assembly evaluation.

Hara Y, Tatsumi K, Yoshida M, Kajikawa E, Kiyonari H, Kuraku S. Hara Y, et al. BMC Genomics. 2015 Nov 18;16:977. doi: 10.1186/s12864-015-2007-1. BMC Genomics. 2015. PMID: 26581708 Free PMC article.

2

Diversification of non-visual photopigment parapinopsin in spectral sensitivity for diverse pineal functions.

Koyanagi M, Wada S, Kawano-Yamashita E, Hara Y, Kuraku S, Kosaka S, Kawakami K, Tamotsu S, Tsukamoto H, Shichida Y, Terakita A. Koyanagi M, et al. Among authors: hara y. BMC Biol. 2015 Sep 15;13:73. doi: 10.1186/s12915-015-0174-9. BMC Biol. 2015. PMID: 26370232 Free PMC article.

3

Incorporating tree-thinking and evolutionary time scale into developmental biology.

Kuraku S, Feiner N, Keeley SD, Hara Y. Kuraku S, et al. Among authors: hara y. Dev Growth Differ. 2016 Jan;58(1):131-42. doi: 10.1111/dgd.12258. Epub 2016 Jan 5. Dev Growth Differ. 2016. PMID: 26818824 Review.

4

Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum.

Takeuchi M, Yamaguchi S, Sakakibara Y, Hayashi T, Matsuda K, Hara Y, Tanegashima C, Shimizu T, Kuraku S, Hibi M. Takeuchi M, et al. Among authors: hara y. J Comp Neurol. 2017 May 1;525(7):1558-1585. doi: 10.1002/cne.24114. Epub 2016 Oct 25. J Comp Neurol. 2017. PMID: 27615194

5

CTCF binding landscape in jawless fish with reference to Hox cluster evolution.

Kadota M, Hara Y, Tanaka K, Takagi W, Tanegashima C, Nishimura O, Kuraku S. Kadota M, et al. Among authors: hara y. Sci Rep. 2017 Jul 10;7(1):4957. doi: 10.1038/s41598-017-04506-x. Sci Rep. 2017. PMID: 28694486 Free PMC article.

6

gVolante for standardizing completeness assessment of genome and transcriptome assemblies.

Nishimura O, Hara Y, Kuraku S. Nishimura O, et al. Among authors: hara y. Bioinformatics. 2017 Nov 15;33(22):3635-3637. doi: 10.1093/bioinformatics/btx445. Bioinformatics. 2017. PMID: 29036533 Free PMC article.

7

Madagascar ground gecko genome analysis characterizes asymmetric fates of duplicated genes.

Hara Y, Takeuchi M, Kageyama Y, Tatsumi K, Hibi M, Kiyonari H, Kuraku S. Hara Y, et al. BMC Biol. 2018 Apr 16;16(1):40. doi: 10.1186/s12915-018-0509-4. BMC Biol. 2018. PMID: 29661185 Free PMC article.

8

Shark genomes provide insights into elasmobranch evolution and the origin of vertebrates.

Hara Y, Yamaguchi K, Onimaru K, Kadota M, Koyanagi M, Keeley SD, Tatsumi K, Tanaka K, Motone F, Kageyama Y, Nozu R, Adachi N, Nishimura O, Nakagawa R, Tanegashima C, Kiyatake I, Matsumoto R, Murakumo K, Nishida K, Terakita A, Kuratani S, Sato K, Hyodo S, Kuraku S. Hara Y, et al. Nat Ecol Evol. 2018 Nov;2(11):1761-1771. doi: 10.1038/s41559-018-0673-5. Epub 2018 Oct 8. Nat Ecol Evol. 2018. PMID: 30297745

9

Evaluating Genome Assemblies and Gene Models Using gVolante.

Nishimura O, Hara Y, Kuraku S. Nishimura O, et al. Among authors: hara y. Methods Mol Biol. 2019;1962:247-256. doi: 10.1007/978-1-4939-9173-0_15. Methods Mol Biol. 2019. PMID: 31020565

10

Comprehensive analysis of genes contributing to euryhalinity in the bull shark, Carcharhinus leucas; Na⁺-Cl^- co-transporter is one of the key renal factors upregulated in acclimation to low-salinity environment.

Imaseki I, Wakabayashi M, Hara Y, Watanabe T, Takabe S, Kakumura K, Honda Y, Ueda K, Murakumo K, Matsumoto R, Matsumoto Y, Nakamura M, Takagi W, Kuraku S, Hyodo S. Imaseki I, et al. Among authors: hara y. J Exp Biol. 2019 Jun 27;222(Pt 12):jeb201780. doi: 10.1242/jeb.201780. J Exp Biol. 2019. PMID: 31138636

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