Sugita Y - Search Results

1

Crystal Structures of SecYEG in Lipidic Cubic Phase Elucidate a Precise Resting and a Peptide-Bound State.

Tanaka Y, Sugano Y, Takemoto M, Mori T, Furukawa A, Kusakizako T, Kumazaki K, Kashima A, Ishitani R, Sugita Y, Nureki O, Tsukazaki T. Tanaka Y, et al. Among authors: sugita y. Cell Rep. 2015 Nov 24;13(8):1561-8. doi: 10.1016/j.celrep.2015.10.025. Epub 2015 Nov 12. Cell Rep. 2015. PMID: 26586438 Free article.

2

Mg2+-sensing mechanism of Mg2+ transporter MgtE probed by molecular dynamics study.

Ishitani R, Sugita Y, Dohmae N, Furuya N, Hattori M, Nureki O. Ishitani R, et al. Among authors: sugita y. Proc Natl Acad Sci U S A. 2008 Oct 7;105(40):15393-8. doi: 10.1073/pnas.0802991105. Epub 2008 Oct 1. Proc Natl Acad Sci U S A. 2008. PMID: 18832160 Free PMC article.

3

Conformational transition of Sec machinery inferred from bacterial SecYE structures.

Tsukazaki T, Mori H, Fukai S, Ishitani R, Mori T, Dohmae N, Perederina A, Sugita Y, Vassylyev DG, Ito K, Nureki O. Tsukazaki T, et al. Among authors: sugita y. Nature. 2008 Oct 16;455(7215):988-91. doi: 10.1038/nature07421. Nature. 2008. PMID: 18923527 Free PMC article.

4

Molecular mechanisms underlying the early stage of protein translocation through the Sec translocon.

Mori T, Ishitani R, Tsukazaki T, Nureki O, Sugita Y. Mori T, et al. Among authors: sugita y. Biochemistry. 2010 Feb 9;49(5):945-50. doi: 10.1021/bi901594w. Biochemistry. 2010. PMID: 20055474

5

Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins.

Ahmad S, Singh YH, Paudel Y, Mori T, Sugita Y, Mizuguchi K. Ahmad S, et al. Among authors: sugita y. BMC Bioinformatics. 2010 Oct 27;11:533. doi: 10.1186/1471-2105-11-533. BMC Bioinformatics. 2010. PMID: 20977780 Free PMC article.

6

Analysis of lipid surface area in protein-membrane systems combining Voronoi tessellation and Monte Carlo integration methods.

Mori T, Ogushi F, Sugita Y. Mori T, et al. Among authors: sugita y. J Comput Chem. 2012 Jan 30;33(3):286-93. doi: 10.1002/jcc.21973. Epub 2011 Nov 21. J Comput Chem. 2012. PMID: 22102317

7

Lipid recognition propensities of amino acids in membrane proteins from atomic resolution data.

Morita M, Katta AM, Ahmad S, Mori T, Sugita Y, Mizuguchi K. Morita M, et al. Among authors: sugita y. BMC Biophys. 2011 Dec 14;4:21. doi: 10.1186/2046-1682-4-21. BMC Biophys. 2011. PMID: 22168953 Free PMC article.

8

Energetics of the presequence-binding poses in mitochondrial protein import through Tom20.

Komuro Y, Miyashita N, Mori T, Muneyuki E, Saitoh T, Kohda D, Sugita Y. Komuro Y, et al. Among authors: sugita y. J Phys Chem B. 2013 Mar 14;117(10):2864-71. doi: 10.1021/jp400113e. Epub 2013 Mar 5. J Phys Chem B. 2013. PMID: 23432372

9

Structural basis for dynamic mechanism of proton-coupled symport by the peptide transporter POT.

Doki S, Kato HE, Solcan N, Iwaki M, Koyama M, Hattori M, Iwase N, Tsukazaki T, Sugita Y, Kandori H, Newstead S, Ishitani R, Nureki O. Doki S, et al. Among authors: sugita y. Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11343-8. doi: 10.1073/pnas.1301079110. Epub 2013 Jun 24. Proc Natl Acad Sci U S A. 2013. PMID: 23798427 Free PMC article.

10

Efficient lookup table using a linear function of inverse distance squared.

Jung J, Mori T, Sugita Y. Jung J, et al. Among authors: sugita y. J Comput Chem. 2013 Oct 30;34(28):2412-20. doi: 10.1002/jcc.23404. Epub 2013 Aug 12. J Comput Chem. 2013. PMID: 23934755

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