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A Method to Estimate the Size and Characteristics of HIV-positive Populations Using an Individual-based Stochastic Simulation Model.
Nakagawa F, van Sighem A, Thiebaut R, Smith C, Ratmann O, Cambiano V, Albert J, Amato-Gauci A, Bezemer D, Campbell C, Commenges D, Donoghoe M, Ford D, Kouyos R, Lodwick R, Lundgren J, Pantazis N, Pharris A, Quinten C, Thorne C, Touloumi G, Delpech V, Phillips A; SSOPHIE project working group in EuroCoord. Nakagawa F, et al. Among authors: ratmann o. Epidemiology. 2016 Mar;27(2):247-56. doi: 10.1097/EDE.0000000000000423. Epidemiology. 2016. PMID: 26605814 Free PMC article.
Report 46: Factors driving extensive spatial and temporal fluctuations in COVID-19 fatality rates in Brazilian hospitals.
Brizzi A, Whittaker C, Servo LMS, Hawryluk I, Prete CA Jr, de Souza WM, Aguiar RS, Araujo LJT, Bastos LS, Blenkinsop A, Buss LF, Candido D, Castro MC, Costa SF, Croda J, de Souza Santos AA, Dye C, Flaxman S, Fonseca PLC, Geddes VEV, Gutierrez B, Lemey P, Levin AS, Mellan T, Bonfim DM, Miscouridou X, Mishra S, Monod M, Moreira FRR, Nelson B, Pereira RHM, Ranzani O, Schnekenberg RP, Semenova E, Sonnabend R, Souza RP, Xi X, Sabino EC, Faria NR, Bhatt S, Ratmann O. Brizzi A, et al. Among authors: ratmann o. medRxiv [Preprint]. 2021 Nov 2:2021.11.01.21265731. doi: 10.1101/2021.11.01.21265731. medRxiv. 2021. Update in: Nat Med. 2022 Jul;28(7):1476-1485. doi: 10.1038/s41591-022-01807-1 PMID: 34751273 Free PMC article. Updated. Preprint.
Temporal dynamics and drivers of durable HIV viral load suppression and persistent high- and low-level viremia during Universal Test and Treat scale-up in Uganda: a population-based study.
Rosen JG, Ssekubugu R, Chang LW, Ssempijja V, Galiwango RM, Ssekasanvu J, Ndyanabo A, Kisakye A, Nakigozi G, Rucinski KB, Patel EU, Kennedy CE, Nalugoda F, Kigozi G, Ratmann O, Nelson LJ, Mills LA, Kabatesi D, Tobian AAR, Quinn TC, Kagaayi J, Reynolds SJ, Grabowski MK. Rosen JG, et al. Among authors: ratmann o. medRxiv [Preprint]. 2023 Jun 16:2023.06.15.23291445. doi: 10.1101/2023.06.15.23291445. medRxiv. 2023. Update in: J Int AIDS Soc. 2024 Feb;27(2):e26200. doi: 10.1002/jia2.26200 PMID: 37398460 Free PMC article. Updated. Preprint.
Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.
Wymant C, Blanquart F, Golubchik T, Gall A, Bakker M, Bezemer D, Croucher NJ, Hall M, Hillebregt M, Ong SH, Ratmann O, Albert J, Bannert N, Fellay J, Fransen K, Gourlay A, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos R, Laeyendecker O, Liitsola K, Meyer L, Porter K, Ristola M, van Sighem A, Berkhout B, Cornelissen M, Kellam P, Reiss P, Fraser C; BEEHIVE Collaboration. Wymant C, et al. Among authors: ratmann o. Virus Evol. 2018 May 18;4(1):vey007. doi: 10.1093/ve/vey007. eCollection 2018 Jan. Virus Evol. 2018. PMID: 29876136 Free PMC article.
Phylogenies from dynamic networks.
Metzig C, Ratmann O, Bezemer D, Colijn C. Metzig C, et al. Among authors: ratmann o. PLoS Comput Biol. 2019 Feb 26;15(2):e1006761. doi: 10.1371/journal.pcbi.1006761. eCollection 2019 Feb. PLoS Comput Biol. 2019. PMID: 30807578 Free PMC article.
Decreased Time to Viral Suppression After Implementation of Targeted Testing and Immediate Initiation of Treatment of Acute Human Immunodeficiency Virus Infection Among Men Who Have Sex With Men in Amsterdam.
Dijkstra M, van Rooijen MS, Hillebregt MM, van Sighem A, Smit C, Hogewoning A, Davidovich U, Heijman T, Hoornenborg E, Reiss P, van der Valk M, Prins M, Prins JM, Schim van der Loeff MF, de Bree GJ; HIV Transmission Elimination Amsterdam (H-TEAM) Initiative. Dijkstra M, et al. Clin Infect Dis. 2021 Jun 1;72(11):1952-1960. doi: 10.1093/cid/ciaa505. Clin Infect Dis. 2021. PMID: 32369099
84 results