Thomas P - Search Results

1

Integrating 400 million variants from 80,000 human samples with extensive annotations: towards a knowledge base to analyze disease cohorts.

Hakenberg J, Cheng WY, Thomas P, Wang YC, Uzilov AV, Chen R. Hakenberg J, et al. Among authors: thomas p. BMC Bioinformatics. 2016 Jan 8;17:24. doi: 10.1186/s12859-015-0865-9. BMC Bioinformatics. 2016. PMID: 26746786 Free PMC article.

2

A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature.

Tikk D, Thomas P, Palaga P, Hakenberg J, Leser U. Tikk D, et al. Among authors: thomas p. PLoS Comput Biol. 2010 Jul 1;6(7):e1000837. doi: 10.1371/journal.pcbi.1000837. PLoS Comput Biol. 2010. PMID: 20617200 Free PMC article.

3

Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers.

Thomas PE, Klinger R, Furlong LI, Hofmann-Apitius M, Friedrich CM. Thomas PE, et al. BMC Bioinformatics. 2011;12 Suppl 4(Suppl 4):S4. doi: 10.1186/1471-2105-12-S4-S4. Epub 2011 Jul 5. BMC Bioinformatics. 2011. PMID: 21992066 Free PMC article.

4

A detailed error analysis of 13 kernel methods for protein-protein interaction extraction.

Tikk D, Solt I, Thomas P, Leser U. Tikk D, et al. Among authors: thomas p. BMC Bioinformatics. 2013 Jan 16;14:12. doi: 10.1186/1471-2105-14-12. BMC Bioinformatics. 2013. PMID: 23323857 Free PMC article.

5

SETH detects and normalizes genetic variants in text.

Thomas P, Rocktäschel T, Hakenberg J, Lichtblau Y, Leser U. Thomas P, et al. Bioinformatics. 2016 Sep 15;32(18):2883-5. doi: 10.1093/bioinformatics/btw234. Epub 2016 Jun 2. Bioinformatics. 2016. PMID: 27256315

6

Computer-assisted curation of a human regulatory core network from the biological literature.

Thomas P, Durek P, Solt I, Klinger B, Witzel F, Schulthess P, Mayer Y, Tikk D, Blüthgen N, Leser U. Thomas P, et al. Bioinformatics. 2015 Apr 15;31(8):1258-66. doi: 10.1093/bioinformatics/btu795. Epub 2014 Nov 29. Bioinformatics. 2015. PMID: 25433699

7

GeneView: a comprehensive semantic search engine for PubMed.

Thomas P, Starlinger J, Vowinkel A, Arzt S, Leser U. Thomas P, et al. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W585-91. doi: 10.1093/nar/gks563. Epub 2012 Jun 12. Nucleic Acids Res. 2012. PMID: 22693219 Free PMC article.

8

BioCreative III interactive task: an overview.

Arighi CN, Roberts PM, Agarwal S, Bhattacharya S, Cesareni G, Chatr-Aryamontri A, Clematide S, Gaudet P, Giglio MG, Harrow I, Huala E, Krallinger M, Leser U, Li D, Liu F, Lu Z, Maltais LJ, Okazaki N, Perfetto L, Rinaldi F, Sætre R, Salgado D, Srinivasan P, Thomas PE, Toldo L, Hirschman L, Wu CH. Arighi CN, et al. Among authors: thomas pe. BMC Bioinformatics. 2011 Oct 3;12 Suppl 8(Suppl 8):S4. doi: 10.1186/1471-2105-12-S8-S4. BMC Bioinformatics. 2011. PMID: 22151968 Free PMC article.

9

Assembly of a comprehensive regulatory network for the mammalian circadian clock: a bioinformatics approach.

Lehmann R, Childs L, Thomas P, Abreu M, Fuhr L, Herzel H, Leser U, Relógio A. Lehmann R, et al. Among authors: thomas p. PLoS One. 2015 May 6;10(5):e0126283. doi: 10.1371/journal.pone.0126283. eCollection 2015. PLoS One. 2015. PMID: 25945798 Free PMC article.

10

SIA: a scalable interoperable annotation server for biomedical named entities.

Kirschnick J, Thomas P, Roller R, Hennig L. Kirschnick J, et al. Among authors: thomas p. J Cheminform. 2018 Dec 14;10(1):63. doi: 10.1186/s13321-018-0319-2. J Cheminform. 2018. PMID: 30552534 Free PMC article.

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