Nagasaki M - Search Results

1

A Bayesian approach for estimating allele-specific expression from RNA-Seq data with diploid genomes.

Nariai N, Kojima K, Mimori T, Kawai Y, Nagasaki M. Nariai N, et al. Among authors: nagasaki m. BMC Genomics. 2016 Jan 11;17 Suppl 1(Suppl 1):2. doi: 10.1186/s12864-015-2295-5. BMC Genomics. 2016. PMID: 26818838 Free PMC article.

2

An efficient grid layout algorithm for biological networks utilizing various biological attributes.

Kojima K, Nagasaki M, Jeong E, Kato M, Miyano S. Kojima K, et al. Among authors: nagasaki m. BMC Bioinformatics. 2007 Mar 6;8:76. doi: 10.1186/1471-2105-8-76. BMC Bioinformatics. 2007. PMID: 17338825 Free PMC article.

3

Fast grid layout algorithm for biological networks with sweep calculation.

Kojima K, Nagasaki M, Miyano S. Kojima K, et al. Among authors: nagasaki m. Bioinformatics. 2008 Jun 15;24(12):1433-41. doi: 10.1093/bioinformatics/btn196. Epub 2008 Apr 18. Bioinformatics. 2008. PMID: 18424458

4

BFL: a node and edge betweenness based fast layout algorithm for large scale networks.

Hashimoto TB, Nagasaki M, Kojima K, Miyano S. Hashimoto TB, et al. Among authors: nagasaki m. BMC Bioinformatics. 2009 Jan 15;10:19. doi: 10.1186/1471-2105-10-19. BMC Bioinformatics. 2009. PMID: 19146673 Free PMC article.

5

A state space representation of VAR models with sparse learning for dynamic gene networks.

Kojima K, Yamaguchi R, Imoto S, Yamauchi M, Nagasaki M, Yoshida R, Shimamura T, Ueno K, Higuchi T, Gotoh N, Miyano S. Kojima K, et al. Among authors: nagasaki m. Genome Inform. 2010 Jan;22:56-68. Genome Inform. 2010. PMID: 20238419

6

An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information.

Kojima K, Nagasaki M, Miyano S. Kojima K, et al. Among authors: nagasaki m. BMC Bioinformatics. 2010 Jun 18;11:335. doi: 10.1186/1471-2105-11-335. BMC Bioinformatics. 2010. PMID: 20565884 Free PMC article.

7

Cell illustrator 4.0: a computational platform for systems biology.

Nagasaki M, Saito A, Jeong E, Li C, Kojima K, Ikeda E, Miyano S. Nagasaki M, et al. Stud Health Technol Inform. 2011;162:160-81. Stud Health Technol Inform. 2011. PMID: 21685571

8

Gene regulatory network clustering for graph layout based on microarray gene expression data.

Kojima K, Imoto S, Nagasaki M, Miyano S. Kojima K, et al. Among authors: nagasaki m. Genome Inform. 2010;24:84-95. Genome Inform. 2010. PMID: 22081591 Free article.

9

Cell Illustrator 4.0: a computational platform for systems biology.

Nagasaki M, Saito A, Jeong E, Li C, Kojima K, Ikeda E, Miyano S. Nagasaki M, et al. In Silico Biol. 2010;10(1):5-26. doi: 10.3233/ISB-2010-0415. In Silico Biol. 2010. PMID: 22430219

10

Transposon mutagenesis identifies genes that transform neural stem cells into glioma-initiating cells.

Koso H, Takeda H, Yew CC, Ward JM, Nariai N, Ueno K, Nagasaki M, Watanabe S, Rust AG, Adams DJ, Copeland NG, Jenkins NA. Koso H, et al. Among authors: nagasaki m. Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):E2998-3007. doi: 10.1073/pnas.1215899109. Epub 2012 Oct 8. Proc Natl Acad Sci U S A. 2012. PMID: 23045694 Free PMC article.

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