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82 results

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Page 1
The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis.
Belda E, van Heck RG, José Lopez-Sanchez M, Cruveiller S, Barbe V, Fraser C, Klenk HP, Petersen J, Morgat A, Nikel PI, Vallenet D, Rouy Z, Sekowska A, Martins Dos Santos VA, de Lorenzo V, Danchin A, Médigue C. Belda E, et al. Among authors: vallenet d. Environ Microbiol. 2016 Oct;18(10):3403-3424. doi: 10.1111/1462-2920.13230. Epub 2016 Apr 28. Environ Microbiol. 2016. PMID: 26913973
A novel binary pesticidal protein from Chryseobacterium arthrosphaerae controls western corn rootworm by a different mode of action to existing commercial pesticidal proteins.
Jabeur R, Guyon V, Toth S, Pereira AE, Huynh MP, Selmani Z, Boland E, Bosio M, Beuf L, Clark P, Vallenet D, Achouak W, Audiffrin C, Torney F, Paul W, Heulin T, Hibbard BE, Toepfer S, Sallaud C. Jabeur R, et al. Among authors: vallenet d. PLoS One. 2023 Feb 17;18(2):e0267220. doi: 10.1371/journal.pone.0267220. eCollection 2023. PLoS One. 2023. PMID: 36800363 Free PMC article.
AMIGene: Annotation of MIcrobial Genes.
Bocs S, Cruveiller S, Vallenet D, Nuel G, Médigue C. Bocs S, et al. Among authors: vallenet d. Nucleic Acids Res. 2003 Jul 1;31(13):3723-6. doi: 10.1093/nar/gkg590. Nucleic Acids Res. 2003. PMID: 12824403 Free PMC article.
Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium.
Barbe V, Vallenet D, Fonknechten N, Kreimeyer A, Oztas S, Labarre L, Cruveiller S, Robert C, Duprat S, Wincker P, Ornston LN, Weissenbach J, Marlière P, Cohen GN, Médigue C. Barbe V, et al. Among authors: vallenet d. Nucleic Acids Res. 2004 Oct 28;32(19):5766-79. doi: 10.1093/nar/gkh910. Print 2004. Nucleic Acids Res. 2004. PMID: 15514110 Free PMC article.
Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125.
Médigue C, Krin E, Pascal G, Barbe V, Bernsel A, Bertin PN, Cheung F, Cruveiller S, D'Amico S, Duilio A, Fang G, Feller G, Ho C, Mangenot S, Marino G, Nilsson J, Parrilli E, Rocha EP, Rouy Z, Sekowska A, Tutino ML, Vallenet D, von Heijne G, Danchin A. Médigue C, et al. Among authors: d amico s, vallenet d. Genome Res. 2005 Oct;15(10):1325-35. doi: 10.1101/gr.4126905. Epub 2005 Sep 16. Genome Res. 2005. PMID: 16169927 Free PMC article.
MaGe: a microbial genome annotation system supported by synteny results.
Vallenet D, Labarre L, Rouy Z, Barbe V, Bocs S, Cruveiller S, Lajus A, Pascal G, Scarpelli C, Médigue C. Vallenet D, et al. Nucleic Acids Res. 2006 Jan 10;34(1):53-65. doi: 10.1093/nar/gkj406. Print 2006. Nucleic Acids Res. 2006. PMID: 16407324 Free PMC article.
Comparative genomics of multidrug resistance in Acinetobacter baumannii.
Fournier PE, Vallenet D, Barbe V, Audic S, Ogata H, Poirel L, Richet H, Robert C, Mangenot S, Abergel C, Nordmann P, Weissenbach J, Raoult D, Claverie JM. Fournier PE, et al. Among authors: vallenet d. PLoS Genet. 2006 Jan;2(1):e7. doi: 10.1371/journal.pgen.0020007. Epub 2006 Jan 13. PLoS Genet. 2006. PMID: 16415984 Free PMC article.
Deciphering the evolution and metabolism of an anammox bacterium from a community genome.
Strous M, Pelletier E, Mangenot S, Rattei T, Lehner A, Taylor MW, Horn M, Daims H, Bartol-Mavel D, Wincker P, Barbe V, Fonknechten N, Vallenet D, Segurens B, Schenowitz-Truong C, Médigue C, Collingro A, Snel B, Dutilh BE, Op den Camp HJ, van der Drift C, Cirpus I, van de Pas-Schoonen KT, Harhangi HR, van Niftrik L, Schmid M, Keltjens J, van de Vossenberg J, Kartal B, Meier H, Frishman D, Huynen MA, Mewes HW, Weissenbach J, Jetten MS, Wagner M, Le Paslier D. Strous M, et al. Among authors: vallenet d. Nature. 2006 Apr 6;440(7085):790-4. doi: 10.1038/nature04647. Nature. 2006. PMID: 16598256
Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila.
Vodovar N, Vallenet D, Cruveiller S, Rouy Z, Barbe V, Acosta C, Cattolico L, Jubin C, Lajus A, Segurens B, Vacherie B, Wincker P, Weissenbach J, Lemaitre B, Médigue C, Boccard F. Vodovar N, et al. Among authors: vallenet d. Nat Biotechnol. 2006 Jun;24(6):673-9. doi: 10.1038/nbt1212. Epub 2006 May 14. Nat Biotechnol. 2006. PMID: 16699499
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