Borenstein E - Search Results

1

Metagenomic evidence for taxonomic dysbiosis and functional imbalance in the gastrointestinal tracts of children with cystic fibrosis.

Manor O, Levy R, Pope CE, Hayden HS, Brittnacher MJ, Carr R, Radey MC, Hager KR, Heltshe SL, Ramsey BW, Miller SI, Hoffman LR, Borenstein E. Manor O, et al. Among authors: borenstein e. Sci Rep. 2016 Mar 4;6:22493. doi: 10.1038/srep22493. Sci Rep. 2016. PMID: 26940651 Free PMC article.

2

Multi-omic integration of microbiome data for identifying disease-associated modules.

Muller E, Shiryan I, Borenstein E. Muller E, et al. Among authors: borenstein e. bioRxiv [Preprint]. 2024 Jan 23:2023.07.03.547607. doi: 10.1101/2023.07.03.547607. bioRxiv. 2024. Update in: Nat Commun. 2024 Mar 23;15(1):2621. doi: 10.1038/s41467-024-46888-3 PMID: 37461534 Free PMC article. Updated. Preprint.

3

Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease.

Greenblum S, Turnbaugh PJ, Borenstein E. Greenblum S, et al. Among authors: borenstein e. Proc Natl Acad Sci U S A. 2012 Jan 10;109(2):594-9. doi: 10.1073/pnas.1116053109. Epub 2011 Dec 19. Proc Natl Acad Sci U S A. 2012. PMID: 22184244 Free PMC article.

4

NetSeed: a network-based reverse-ecology tool for calculating the metabolic interface of an organism with its environment.

Carr R, Borenstein E. Carr R, et al. Among authors: borenstein e. Bioinformatics. 2012 Mar 1;28(5):734-5. doi: 10.1093/bioinformatics/btr721. Epub 2012 Jan 4. Bioinformatics. 2012. PMID: 22219204

5

Reverse Ecology: from systems to environments and back.

Levy R, Borenstein E. Levy R, et al. Among authors: borenstein e. Adv Exp Med Biol. 2012;751:329-45. doi: 10.1007/978-1-4614-3567-9_15. Adv Exp Med Biol. 2012. PMID: 22821465

6

Towards a predictive systems-level model of the human microbiome: progress, challenges, and opportunities.

Greenblum S, Chiu HC, Levy R, Carr R, Borenstein E. Greenblum S, et al. Among authors: borenstein e. Curr Opin Biotechnol. 2013 Aug;24(4):810-20. doi: 10.1016/j.copbio.2013.04.001. Epub 2013 Apr 23. Curr Opin Biotechnol. 2013. PMID: 23623295 Free PMC article. Review.

7

Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules.

Levy R, Borenstein E. Levy R, et al. Among authors: borenstein e. Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):12804-9. doi: 10.1073/pnas.1300926110. Epub 2013 Jul 15. Proc Natl Acad Sci U S A. 2013. PMID: 23858463 Free PMC article.

8

Reconstructing the genomic content of microbiome taxa through shotgun metagenomic deconvolution.

Carr R, Shen-Orr SS, Borenstein E. Carr R, et al. Among authors: borenstein e. PLoS Comput Biol. 2013;9(10):e1003292. doi: 10.1371/journal.pcbi.1003292. Epub 2013 Oct 17. PLoS Comput Biol. 2013. PMID: 24146609 Free PMC article.

9

Escherichia coli dysbiosis correlates with gastrointestinal dysfunction in children with cystic fibrosis.

Hoffman LR, Pope CE, Hayden HS, Heltshe S, Levy R, McNamara S, Jacobs MA, Rohmer L, Radey M, Ramsey BW, Brittnacher MJ, Borenstein E, Miller SI. Hoffman LR, et al. Among authors: borenstein e. Clin Infect Dis. 2014 Feb;58(3):396-9. doi: 10.1093/cid/cit715. Epub 2013 Oct 30. Clin Infect Dis. 2014. PMID: 24178246 Free PMC article.

10

Metagenomic systems biology and metabolic modeling of the human microbiome: from species composition to community assembly rules.

Levy R, Borenstein E. Levy R, et al. Among authors: borenstein e. Gut Microbes. 2014 Mar-Apr;5(2):265-70. doi: 10.4161/gmic.28261. Epub 2014 Feb 20. Gut Microbes. 2014. PMID: 24637600 Free PMC article.

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