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A molecular threshold for effector CD8(+) T cell differentiation controlled by transcription factors Blimp-1 and T-bet.
Xin A, Masson F, Liao Y, Preston S, Guan T, Gloury R, Olshansky M, Lin JX, Li P, Speed TP, Smyth GK, Ernst M, Leonard WJ, Pellegrini M, Kaech SM, Nutt SL, Shi W, Belz GT, Kallies A. Xin A, et al. Among authors: smyth gk. Nat Immunol. 2016 Apr;17(4):422-32. doi: 10.1038/ni.3410. Epub 2016 Mar 7. Nat Immunol. 2016. PMID: 26950239 Free PMC article.
Statistical modeling of sequencing errors in SAGE libraries.
Beissbarth T, Hyde L, Smyth GK, Job C, Boon WM, Tan SS, Scott HS, Speed TP. Beissbarth T, et al. Among authors: smyth gk. Bioinformatics. 2004 Aug 4;20 Suppl 1:i31-9. doi: 10.1093/bioinformatics/bth924. Bioinformatics. 2004. PMID: 15262778
Integrative analysis of RUNX1 downstream pathways and target genes.
Michaud J, Simpson KM, Escher R, Buchet-Poyau K, Beissbarth T, Carmichael C, Ritchie ME, Schütz F, Cannon P, Liu M, Shen X, Ito Y, Raskind WH, Horwitz MS, Osato M, Turner DR, Speed TP, Kavallaris M, Smyth GK, Scott HS. Michaud J, et al. Among authors: smyth gk. BMC Genomics. 2008 Jul 31;9:363. doi: 10.1186/1471-2164-9-363. BMC Genomics. 2008. PMID: 18671852 Free PMC article.
The molecular signature of CD8+ T cells undergoing deletional tolerance.
Parish IA, Rao S, Smyth GK, Juelich T, Denyer GS, Davey GM, Strasser A, Heath WR. Parish IA, et al. Among authors: smyth gk. Blood. 2009 May 7;113(19):4575-85. doi: 10.1182/blood-2008-10-185223. Epub 2009 Feb 9. Blood. 2009. PMID: 19204323 Free PMC article.
Blimp1 is limiting for transformation in a mouse plasmacytoma model.
D'Costa K, Emslie D, Metcalf D, Smyth GK, Karnowski A, Kallies A, Nutt SL, Corcoran LM. D'Costa K, et al. Among authors: smyth gk. Blood. 2009 Jun 4;113(23):5911-9. doi: 10.1182/blood-2008-08-172866. Epub 2009 Mar 27. Blood. 2009. PMID: 19329782 Free article.
Illumina WG-6 BeadChip strips should be normalized separately.
Shi W, Banerjee A, Ritchie ME, Gerondakis S, Smyth GK. Shi W, et al. Among authors: smyth gk. BMC Bioinformatics. 2009 Nov 11;10:372. doi: 10.1186/1471-2105-10-372. BMC Bioinformatics. 2009. PMID: 19903361 Free PMC article.
265 results