Lindorff-Larsen K - Search Results

1

Bioinformatics analysis identifies several intrinsically disordered human E3 ubiquitin-protein ligases.

Boomsma W, Nielsen SV, Lindorff-Larsen K, Hartmann-Petersen R, Ellgaard L. Boomsma W, et al. PeerJ. 2016 Feb 25;4:e1725. doi: 10.7717/peerj.1725. eCollection 2016. PeerJ. 2016. PMID: 26966660 Free PMC article.

2

A sticky cage can slow down folding.

Boomsma W, Lindorff-Larsen K. Boomsma W, et al. Biophys J. 2013 Mar 5;104(5):964-5. doi: 10.1016/j.bpj.2013.01.036. Biophys J. 2013. PMID: 23473477 Free PMC article. No abstract available.

3

PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure.

Boomsma W, Frellsen J, Harder T, Bottaro S, Johansson KE, Tian P, Stovgaard K, Andreetta C, Olsson S, Valentin JB, Antonov LD, Christensen AS, Borg M, Jensen JH, Lindorff-Larsen K, Ferkinghoff-Borg J, Hamelryck T. Boomsma W, et al. J Comput Chem. 2013 Jul 15;34(19):1697-705. doi: 10.1002/jcc.23292. Epub 2013 Apr 26. J Comput Chem. 2013. PMID: 23619610

4

Protein structure validation and refinement using amide proton chemical shifts derived from quantum mechanics.

Christensen AS, Linnet TE, Borg M, Boomsma W, Lindorff-Larsen K, Hamelryck T, Jensen JH. Christensen AS, et al. PLoS One. 2013 Dec 31;8(12):e84123. doi: 10.1371/journal.pone.0084123. eCollection 2013. PLoS One. 2013. PMID: 24391900 Free PMC article.

5

Combining experiments and simulations using the maximum entropy principle.

Boomsma W, Ferkinghoff-Borg J, Lindorff-Larsen K. Boomsma W, et al. PLoS Comput Biol. 2014 Feb 20;10(2):e1003406. doi: 10.1371/journal.pcbi.1003406. eCollection 2014 Feb. PLoS Comput Biol. 2014. PMID: 24586124 Free PMC article. Review.

6

Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts.

Boomsma W, Tian P, Frellsen J, Ferkinghoff-Borg J, Hamelryck T, Lindorff-Larsen K, Vendruscolo M. Boomsma W, et al. Proc Natl Acad Sci U S A. 2014 Sep 23;111(38):13852-7. doi: 10.1073/pnas.1404948111. Epub 2014 Sep 5. Proc Natl Acad Sci U S A. 2014. PMID: 25192938 Free PMC article.

7

Structure of a functional amyloid protein subunit computed using sequence variation.

Tian P, Boomsma W, Wang Y, Otzen DE, Jensen MH, Lindorff-Larsen K. Tian P, et al. J Am Chem Soc. 2015 Jan 14;137(1):22-5. doi: 10.1021/ja5093634. Epub 2014 Dec 22. J Am Chem Soc. 2015. PMID: 25415595

8

Comparing molecular dynamics force fields in the essential subspace.

Martín-García F, Papaleo E, Gomez-Puertas P, Boomsma W, Lindorff-Larsen K. Martín-García F, et al. PLoS One. 2015 Mar 26;10(3):e0121114. doi: 10.1371/journal.pone.0121114. eCollection 2015. PLoS One. 2015. PMID: 25811178 Free PMC article.

9

A Two-step Protein Quality Control Pathway for a Misfolded DJ-1 Variant in Fission Yeast.

Mathiassen SG, Larsen IB, Poulsen EG, Madsen CT, Papaleo E, Lindorff-Larsen K, Kragelund BB, Nielsen ML, Kriegenburg F, Hartmann-Petersen R. Mathiassen SG, et al. J Biol Chem. 2015 Aug 21;290(34):21141-21153. doi: 10.1074/jbc.M115.662312. Epub 2015 Jul 7. J Biol Chem. 2015. PMID: 26152728 Free PMC article.

10

ENCORE: Software for Quantitative Ensemble Comparison.

Tiberti M, Papaleo E, Bengtsen T, Boomsma W, Lindorff-Larsen K. Tiberti M, et al. PLoS Comput Biol. 2015 Oct 27;11(10):e1004415. doi: 10.1371/journal.pcbi.1004415. eCollection 2015 Oct. PLoS Comput Biol. 2015. PMID: 26505632 Free PMC article.

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