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WikiPathways 2024: next generation pathway database.
Agrawal A, Balcı H, Hanspers K, Coort SL, Martens M, Slenter DN, Ehrhart F, Digles D, Waagmeester A, Wassink I, Abbassi-Daloii T, Lopes EN, Iyer A, Acosta JM, Willighagen LG, Nishida K, Riutta A, Basaric H, Evelo CT, Willighagen EL, Kutmon M, Pico AR. Agrawal A, et al. Among authors: waagmeester a. Nucleic Acids Res. 2024 Jan 5;52(D1):D679-D689. doi: 10.1093/nar/gkad960. Nucleic Acids Res. 2024. PMID: 37941138 Free PMC article.
Wikidata as a semantic framework for the Gene Wiki initiative.
Burgstaller-Muehlbacher S, Waagmeester A, Mitraka E, Turner J, Putman T, Leong J, Naik C, Pavlidis P, Schriml L, Good BM, Su AI. Burgstaller-Muehlbacher S, et al. Among authors: waagmeester a. Database (Oxford). 2016 Mar 17;2016:baw015. doi: 10.1093/database/baw015. Print 2016. Database (Oxford). 2016. PMID: 26989148 Free PMC article.
ChlamBase: a curated model organism database for the Chlamydia research community.
Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Stupp GS, Waagmeester A, Good BM, Wu C, Su AI. Putman T, et al. Among authors: waagmeester a. Database (Oxford). 2019 Jan 1;2019:baz091. doi: 10.1093/database/baz091. Database (Oxford). 2019. PMID: 31211397 Free PMC article. No abstract available.
Wikidata as a knowledge graph for the life sciences.
Waagmeester A, Stupp G, Burgstaller-Muehlbacher S, Good BM, Griffith M, Griffith OL, Hanspers K, Hermjakob H, Hudson TS, Hybiske K, Keating SM, Manske M, Mayers M, Mietchen D, Mitraka E, Pico AR, Putman T, Riutta A, Queralt-Rosinach N, Schriml LM, Shafee T, Slenter D, Stephan R, Thornton K, Tsueng G, Tu R, Ul-Hasan S, Willighagen E, Wu C, Su AI. Waagmeester A, et al. Elife. 2020 Mar 17;9:e52614. doi: 10.7554/eLife.52614. Elife. 2020. PMID: 32180547 Free PMC article.
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research.
Slenter DN, Kutmon M, Hanspers K, Riutta A, Windsor J, Nunes N, Mélius J, Cirillo E, Coort SL, Digles D, Ehrhart F, Giesbertz P, Kalafati M, Martens M, Miller R, Nishida K, Rieswijk L, Waagmeester A, Eijssen LMT, Evelo CT, Pico AR, Willighagen EL. Slenter DN, et al. Among authors: waagmeester a. Nucleic Acids Res. 2018 Jan 4;46(D1):D661-D667. doi: 10.1093/nar/gkx1064. Nucleic Acids Res. 2018. PMID: 29136241 Free PMC article.
WikiPathways: connecting communities.
Martens M, Ammar A, Riutta A, Waagmeester A, Slenter DN, Hanspers K, A Miller R, Digles D, Lopes EN, Ehrhart F, Dupuis LJ, Winckers LA, Coort SL, Willighagen EL, Evelo CT, Pico AR, Kutmon M. Martens M, et al. Among authors: waagmeester a. Nucleic Acids Res. 2021 Jan 8;49(D1):D613-D621. doi: 10.1093/nar/gkaa1024. Nucleic Acids Res. 2021. PMID: 33211851 Free PMC article.
28 results