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Page 1
Aquaria: simplifying discovery and insight from protein structures.
O'Donoghue SI, Sabir KS, Kalemanov M, Stolte C, Wellmann B, Ho V, Roos M, Perdigão N, Buske FA, Heinrich J, Rost B, Schafferhans A. O'Donoghue SI, et al. Nat Methods. 2015 Feb;12(2):98-9. doi: 10.1038/nmeth.3258. Nat Methods. 2015. PMID: 25633501 No abstract available.
Unexpected features of the dark proteome.
Perdigão N, Heinrich J, Stolte C, Sabir KS, Buckley MJ, Tabor B, Signal B, Gloss BS, Hammang CJ, Rost B, Schafferhans A, O'Donoghue SI. Perdigão N, et al. Proc Natl Acad Sci U S A. 2015 Dec 29;112(52):15898-903. doi: 10.1073/pnas.1508380112. Epub 2015 Nov 17. Proc Natl Acad Sci U S A. 2015. PMID: 26578815 Free PMC article.
Single-cell transcriptomics reveals involution mimicry during the specification of the basal breast cancer subtype.
Valdés-Mora F, Salomon R, Gloss BS, Law AMK, Venhuizen J, Castillo L, Murphy KJ, Magenau A, Papanicolaou M, Rodriguez de la Fuente L, Roden DL, Colino-Sanguino Y, Kikhtyak Z, Farbehi N, Conway JRW, Sikta N, Oakes SR, Cox TR, O'Donoghue SI, Timpson P, Ormandy CJ, Gallego-Ortega D. Valdés-Mora F, et al. Among authors: o donoghue si. Cell Rep. 2021 Apr 13;35(2):108945. doi: 10.1016/j.celrep.2021.108945. Cell Rep. 2021. PMID: 33852842 Free article.
Visualization and Analysis of Epiproteome Dynamics.
Kaur S, Baldi B, Vuong J, O'Donoghue SI. Kaur S, et al. Among authors: o donoghue si. J Mol Biol. 2019 Apr 5;431(8):1519-1539. doi: 10.1016/j.jmb.2019.01.044. Epub 2019 Feb 13. J Mol Biol. 2019. PMID: 30769119 Review.
Visualization of omics data for systems biology.
Gehlenborg N, O'Donoghue SI, Baliga NS, Goesmann A, Hibbs MA, Kitano H, Kohlbacher O, Neuweger H, Schneider R, Tenenbaum D, Gavin AC. Gehlenborg N, et al. Nat Methods. 2010 Mar;7(3 Suppl):S56-68. doi: 10.1038/nmeth.1436. Nat Methods. 2010. PMID: 20195258 Review.
SnapShot: Insulin/IGF1 Signaling.
Ma DK, Stolte C, Krycer JR, James DE, O'Donoghue SI. Ma DK, et al. Cell. 2015 May 7;161(4):948-948.e1. doi: 10.1016/j.cell.2015.04.041. Cell. 2015. PMID: 25957692 Free article.
60 results