Schlapbach R - Search Results

1

Highly sensitive, non-invasive detection of colorectal cancer mutations using single molecule, third generation sequencing.

Russo G, Patrignani A, Poveda L, Hoehn F, Scholtka B, Schlapbach R, Garvin AM. Russo G, et al. Among authors: schlapbach r. Appl Transl Genom. 2015 Oct 16;7:32-9. doi: 10.1016/j.atg.2015.08.006. eCollection 2015 Dec. Appl Transl Genom. 2015. PMID: 27054083 Free PMC article.

2

Design and validation of a partial-genome microarray for transcriptional profiling of the Bradyrhizobium japonicum symbiotic gene region.

Hauser F, Lindemann A, Vuilleumier S, Patrignani A, Schlapbach R, Fischer HM, Hennecke H. Hauser F, et al. Among authors: schlapbach r. Mol Genet Genomics. 2006 Jan;275(1):55-67. doi: 10.1007/s00438-005-0059-7. Epub 2005 Nov 17. Mol Genet Genomics. 2006. PMID: 16328374

3

Gene expression profiles of different breast cancer cells compared with their responsiveness to fermented mistletoe (Viscum album L.) extracts Iscador from oak (Quercus), pine (Pinus), white fir (Abies) and apple tree (Malus) in vitro.

Eggenschwiler J, Patrignani A, Wagner U, Rehrauer H, Schlapbach R, Rist L, Ramos MH, Viviani A. Eggenschwiler J, et al. Among authors: schlapbach r. Arzneimittelforschung. 2006 Jun;56(6A):483-96. doi: 10.1055/s-0031-1296816. Arzneimittelforschung. 2006. PMID: 16927530

4

Precise breakpoint localization of large genomic deletions using PacBio and Illumina next-generation sequencers.

Okoniewski MJ, Meienberg J, Patrignani A, Szabelska A, Matyas G, Schlapbach R. Okoniewski MJ, et al. Among authors: schlapbach r. Biotechniques. 2013 Feb;54(2):98-100. doi: 10.2144/000113992. Biotechniques. 2013. PMID: 23384181 Free article.

5

New insights into the performance of human whole-exome capture platforms.

Meienberg J, Zerjavic K, Keller I, Okoniewski M, Patrignani A, Ludin K, Xu Z, Steinmann B, Carrel T, Röthlisberger B, Schlapbach R, Bruggmann R, Matyas G. Meienberg J, et al. Among authors: schlapbach r. Nucleic Acids Res. 2015 Jun 23;43(11):e76. doi: 10.1093/nar/gkv216. Epub 2015 Mar 27. Nucleic Acids Res. 2015. PMID: 25820422 Free PMC article.

6

SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis.

Hatakeyama M, Opitz L, Russo G, Qi W, Schlapbach R, Rehrauer H. Hatakeyama M, et al. Among authors: schlapbach r. BMC Bioinformatics. 2016 Jun 2;17(1):228. doi: 10.1186/s12859-016-1104-8. BMC Bioinformatics. 2016. PMID: 27255077 Free PMC article.

7

Cell Cycle Constraints and Environmental Control of Local DNA Hypomethylation in α-Proteobacteria.

Ardissone S, Redder P, Russo G, Frandi A, Fumeaux C, Patrignani A, Schlapbach R, Falquet L, Viollier PH. Ardissone S, et al. Among authors: schlapbach r. PLoS Genet. 2016 Dec 20;12(12):e1006499. doi: 10.1371/journal.pgen.1006499. eCollection 2016 Dec. PLoS Genet. 2016. PMID: 27997543 Free PMC article.

8

Multiple hybrid de novo genome assembly of finger millet, an orphan allotetraploid crop.

Hatakeyama M, Aluri S, Balachadran MT, Sivarajan SR, Patrignani A, Grüter S, Poveda L, Shimizu-Inatsugi R, Baeten J, Francoijs KJ, Nataraja KN, Reddy YAN, Phadnis S, Ravikumar RL, Schlapbach R, Sreeman SM, Shimizu KK. Hatakeyama M, et al. Among authors: schlapbach r. DNA Res. 2018 Feb 1;25(1):39-47. doi: 10.1093/dnares/dsx036. DNA Res. 2018. PMID: 28985356 Free PMC article.

9

Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats.

Schmid M, Frei D, Patrignani A, Schlapbach R, Frey JE, Remus-Emsermann MNP, Ahrens CH. Schmid M, et al. Among authors: schlapbach r. Nucleic Acids Res. 2018 Sep 28;46(17):8953-8965. doi: 10.1093/nar/gky726. Nucleic Acids Res. 2018. PMID: 30137508 Free PMC article.

10

An improved draft genome assembly of Meloidogyne graminicola IARI strain using long-read sequencing.

Somvanshi VS, Dash M, Bhat CG, Budhwar R, Godwin J, Shukla RN, Patrignani A, Schlapbach R, Rao U. Somvanshi VS, et al. Among authors: schlapbach r. Gene. 2021 Aug 15;793:145748. doi: 10.1016/j.gene.2021.145748. Epub 2021 May 30. Gene. 2021. PMID: 34077775

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