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Improving de novo Assembly Based on Read Classification.
Liao X, Li M, Luo J, Zou Y, Wu FX, Pan Y, Luo F, Wang J. Liao X, et al. Among authors: li m. IEEE/ACM Trans Comput Biol Bioinform. 2020 Jan-Feb;17(1):177-188. doi: 10.1109/TCBB.2018.2861380. Epub 2018 Jul 30. IEEE/ACM Trans Comput Biol Bioinform. 2020. PMID: 30059317
EPGA2: memory-efficient de novo assembler.
Luo J, Wang J, Li W, Zhang Z, Wu FX, Li M, Pan Y. Luo J, et al. Among authors: li w, li m. Bioinformatics. 2015 Dec 15;31(24):3988-90. doi: 10.1093/bioinformatics/btv487. Epub 2015 Aug 26. Bioinformatics. 2015. PMID: 26315905
Detecting Protein Complexes Based on Uncertain Graph Model.
Zhao B, Wang J, Li M, Wu FX, Pan Y. Zhao B, et al. Among authors: li m. IEEE/ACM Trans Comput Biol Bioinform. 2014 May-Jun;11(3):486-97. doi: 10.1109/TCBB.2013.2297915. IEEE/ACM Trans Comput Biol Bioinform. 2014. PMID: 26356017
GapReduce: a gap filling algorithm based on partitioned read sets.
Luo J, Wang J, Shang J, Luo H, Li M, Wu F, Pan Y. Luo J, et al. Among authors: li m. IEEE/ACM Trans Comput Biol Bioinform. 2018 Jan 5. doi: 10.1109/TCBB.2018.2789909. Online ahead of print. IEEE/ACM Trans Comput Biol Bioinform. 2018. PMID: 29993951
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