Szczepaniak K - Search Results

1

Modeling of Protein-RNA Complex Structures Using Computational Docking Methods.

Madan B, Kasprzak JM, Tuszynska I, Magnus M, Szczepaniak K, Dawson WK, Bujnicki JM. Madan B, et al. Among authors: szczepaniak k. Methods Mol Biol. 2016;1414:353-72. doi: 10.1007/978-1-4939-3569-7_21. Methods Mol Biol. 2016. PMID: 27094302

2

Designability landscape reveals sequence features that define axial helix rotation in four-helical homo-oligomeric antiparallel coiled-coil structures.

Szczepaniak K, Lach G, Bujnicki JM, Dunin-Horkawicz S. Szczepaniak K, et al. J Struct Biol. 2014 Nov;188(2):123-33. doi: 10.1016/j.jsb.2014.09.007. Epub 2014 Sep 30. J Struct Biol. 2014. PMID: 25278129

3

Identification of protein structural elements responsible for the diversity of sequence preferences among Mini-III RNases.

Głów D, Kurkowska M, Czarnecka J, Szczepaniak K, Pianka D, Kappert V, Bujnicki JM, Skowronek KJ. Głów D, et al. Among authors: szczepaniak k. Sci Rep. 2016 Dec 7;6:38612. doi: 10.1038/srep38612. Sci Rep. 2016. PMID: 27924926 Free PMC article.

4

Variability of the core geometry in parallel coiled-coil bundles.

Szczepaniak K, Ludwiczak J, Winski A, Dunin-Horkawicz S. Szczepaniak K, et al. J Struct Biol. 2018 Oct;204(1):117-124. doi: 10.1016/j.jsb.2018.07.002. Epub 2018 Jul 2. J Struct Biol. 2018. PMID: 30042011

5

DeepCoil-a fast and accurate prediction of coiled-coil domains in protein sequences.

Ludwiczak J, Winski A, Szczepaniak K, Alva V, Dunin-Horkawicz S. Ludwiczak J, et al. Among authors: szczepaniak k. Bioinformatics. 2019 Aug 15;35(16):2790-2795. doi: 10.1093/bioinformatics/bty1062. Bioinformatics. 2019. PMID: 30601942

6

PiPred - a deep-learning method for prediction of π-helices in protein sequences.

Ludwiczak J, Winski A, da Silva Neto AM, Szczepaniak K, Alva V, Dunin-Horkawicz S. Ludwiczak J, et al. Among authors: szczepaniak k. Sci Rep. 2019 May 3;9(1):6888. doi: 10.1038/s41598-019-43189-4. Sci Rep. 2019. PMID: 31053765 Free PMC article.

7

ANO5 mutations in the Polish limb girdle muscular dystrophy patients: Effects on the protein structure.

Jarmula A, Łusakowska A, Fichna JP, Topolewska M, Macias A, Johnson K, Töpf A, Straub V, Rosiak E, Szczepaniak K, Dunin-Horkawicz S, Maruszak A, Kaminska AM, Redowicz MJ. Jarmula A, et al. Among authors: szczepaniak k. Sci Rep. 2019 Aug 8;9(1):11533. doi: 10.1038/s41598-019-47849-3. Sci Rep. 2019. PMID: 31395899 Free PMC article.

8

A library of coiled-coil domains: from regular bundles to peculiar twists.

Szczepaniak K, Bukala A, da Silva Neto AM, Ludwiczak J, Dunin-Horkawicz S. Szczepaniak K, et al. Bioinformatics. 2021 Apr 1;36(22-23):5368-5376. doi: 10.1093/bioinformatics/btaa1041. Bioinformatics. 2021. PMID: 33325494 Free PMC article.

9

Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins.

Kamiński K, Ludwiczak J, Jasiński M, Bukala A, Madaj R, Szczepaniak K, Dunin-Horkawicz S. Kamiński K, et al. Among authors: szczepaniak k. Brief Bioinform. 2022 Jan 17;23(1):bbab371. doi: 10.1093/bib/bbab371. Brief Bioinform. 2022. PMID: 34571541 Free PMC article.

10

The disordered P granule protein LAF-1 drives phase separation into droplets with tunable viscosity and dynamics.

Elbaum-Garfinkle S, Kim Y, Szczepaniak K, Chen CC, Eckmann CR, Myong S, Brangwynne CP. Elbaum-Garfinkle S, et al. Among authors: szczepaniak k. Proc Natl Acad Sci U S A. 2015 Jun 9;112(23):7189-94. doi: 10.1073/pnas.1504822112. Epub 2015 May 26. Proc Natl Acad Sci U S A. 2015. PMID: 26015579 Free PMC article.

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