Yang JY - Search Results

1

KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis.

Yang P, Patrick E, Humphrey SJ, Ghazanfar S, James DE, Jothi R, Yang JY. Yang P, et al. Among authors: yang jy. Proteomics. 2016 Jul;16(13):1868-71. doi: 10.1002/pmic.201600068. Epub 2016 May 27. Proteomics. 2016. PMID: 27145998 Free PMC article.

2

A dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry data.

Wang P, Yang P, Arthur J, Yang JY. Wang P, et al. Among authors: yang p, yang jy. Bioinformatics. 2010 Sep 15;26(18):2242-9. doi: 10.1093/bioinformatics/btq403. Epub 2010 Jul 13. Bioinformatics. 2010. PMID: 20628072

3

Re-fraction: a machine learning approach for deterministic identification of protein homologues and splice variants in large-scale MS-based proteomics.

Yang P, Humphrey SJ, Fazakerley DJ, Prior MJ, Yang G, James DE, Yang JY. Yang P, et al. Among authors: yang jy, yang g. J Proteome Res. 2012 May 4;11(5):3035-45. doi: 10.1021/pr300072j. Epub 2012 Mar 30. J Proteome Res. 2012. PMID: 22428558

4

OCAP: an open comprehensive analysis pipeline for iTRAQ.

Wang P, Yang P, Yang JY. Wang P, et al. Among authors: yang p, yang jy. Bioinformatics. 2012 May 15;28(10):1404-5. doi: 10.1093/bioinformatics/bts150. Epub 2012 Mar 29. Bioinformatics. 2012. PMID: 22467906

5

ISL1 regulates peroxisome proliferator-activated receptor γ activation and early adipogenesis via bone morphogenetic protein 4-dependent and -independent mechanisms.

Ma X, Yang P, Kaplan WH, Lee BH, Wu LE, Yang JY, Yasunaga M, Sato K, Chisholm DJ, James DE. Ma X, et al. Among authors: yang p, yang jy. Mol Cell Biol. 2014 Oct 1;34(19):3607-17. doi: 10.1128/MCB.00583-14. Epub 2014 Jul 21. Mol Cell Biol. 2014. PMID: 25047837 Free PMC article.

6

Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data.

Yang P, Zheng X, Jayaswal V, Hu G, Yang JY, Jothi R. Yang P, et al. Among authors: yang jy. PLoS Comput Biol. 2015 Aug 7;11(8):e1004403. doi: 10.1371/journal.pcbi.1004403. eCollection 2015 Aug. PLoS Comput Biol. 2015. PMID: 26252020 Free PMC article.

7

PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications.

Chaudhuri R, Sadrieh A, Hoffman NJ, Parker BL, Humphrey SJ, Stöckli J, Hill AP, James DE, Yang JY. Chaudhuri R, et al. Among authors: yang jy. BMC Genomics. 2015 Aug 19;16(1):617. doi: 10.1186/s12864-015-1820-x. BMC Genomics. 2015. PMID: 26283093 Free PMC article.

8

Characterizing mutation-expression network relationships in multiple cancers.

Ghazanfar S, Yang JYH. Ghazanfar S, et al. Comput Biol Chem. 2016 Aug;63:73-82. doi: 10.1016/j.compbiolchem.2016.02.009. Epub 2016 Feb 12. Comput Biol Chem. 2016. PMID: 26935398

9

Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells.

Yang P, Oldfield A, Kim T, Yang A, Yang JYH, Ho JWK. Yang P, et al. Bioinformatics. 2017 Jul 1;33(13):1916-1920. doi: 10.1093/bioinformatics/btx092. Bioinformatics. 2017. PMID: 28203701 Free PMC article.

10

Taking Kidneys for Granted? Time to Reflect on the Choices We Make.

Wong G, Howell M, Patrick E, Yang J. Wong G, et al. Transplantation. 2017 Dec;101(12):2812-2813. doi: 10.1097/TP.0000000000001850. Transplantation. 2017. PMID: 28640067 No abstract available.

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