Clark NR - Search Results

1

Drug-induced adverse events prediction with the LINCS L1000 data.

Wang Z, Clark NR, Ma'ayan A. Wang Z, et al. Among authors: clark nr. Bioinformatics. 2016 Aug 1;32(15):2338-45. doi: 10.1093/bioinformatics/btw168. Epub 2016 Apr 1. Bioinformatics. 2016. PMID: 27153606 Free PMC article.

2

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool.

Chen EY, Tan CM, Kou Y, Duan Q, Wang Z, Meirelles GV, Clark NR, Ma'ayan A. Chen EY, et al. Among authors: clark nr. BMC Bioinformatics. 2013 Apr 15;14:128. doi: 10.1186/1471-2105-14-128. BMC Bioinformatics. 2013. PMID: 23586463 Free PMC article.

3

Network2Canvas: network visualization on a canvas with enrichment analysis.

Tan CM, Chen EY, Dannenfelser R, Clark NR, Ma'ayan A. Tan CM, et al. Among authors: clark nr. Bioinformatics. 2013 Aug 1;29(15):1872-8. doi: 10.1093/bioinformatics/btt319. Epub 2013 Jun 7. Bioinformatics. 2013. PMID: 23749960 Free PMC article.

4

L1000CDS²: LINCS L1000 characteristic direction signatures search engine.

Duan Q, Reid SP, Clark NR, Wang Z, Fernandez NF, Rouillard AD, Readhead B, Tritsch SR, Hodos R, Hafner M, Niepel M, Sorger PK, Dudley JT, Bavari S, Panchal RG, Ma'ayan A. Duan Q, et al. Among authors: clark nr. NPJ Syst Biol Appl. 2016;2:16015-. doi: 10.1038/npjsba.2016.15. Epub 2016 Aug 4. NPJ Syst Biol Appl. 2016. PMID: 28413689 Free PMC article.

5

Cell-specific prediction and application of drug-induced gene expression profiles.

Hodos R, Zhang P, Lee HC, Duan Q, Wang Z, Clark NR, Ma'ayan A, Wang F, Kidd B, Hu J, Sontag D, Dudley J. Hodos R, et al. Among authors: clark nr. Pac Symp Biocomput. 2018;23:32-43. Pac Symp Biocomput. 2018. PMID: 29218867 Free PMC article.

6

The characteristic direction: a geometrical approach to identify differentially expressed genes.

Clark NR, Hu KS, Feldmann AS, Kou Y, Chen EY, Duan Q, Ma'ayan A. Clark NR, et al. BMC Bioinformatics. 2014 Mar 21;15:79. doi: 10.1186/1471-2105-15-79. BMC Bioinformatics. 2014. PMID: 24650281 Free PMC article.

7

Introduction to statistical methods to analyze large data sets: principal components analysis.

Clark NR, Ma'ayan A. Clark NR, et al. Sci Signal. 2011 Sep 6;4(190):tr3. doi: 10.1126/scisignal.2001967. Sci Signal. 2011. PMID: 21917717 Free PMC article. Review.

8

Introduction to statistical methods for analyzing large data sets: gene-set enrichment analysis.

Clark NR, Ma'ayan A. Clark NR, et al. Sci Signal. 2011 Sep 6;4(190):tr4. doi: 10.1126/scisignal.2001966. Sci Signal. 2011. PMID: 21917718 Free PMC article.

9

Genes2FANs: connecting genes through functional association networks.

Dannenfelser R, Clark NR, Ma'ayan A. Dannenfelser R, et al. Among authors: clark nr. BMC Bioinformatics. 2012 Jul 2;13:156. doi: 10.1186/1471-2105-13-156. BMC Bioinformatics. 2012. PMID: 22748121 Free PMC article.

10

Sets2Networks: network inference from repeated observations of sets.

Clark NR, Dannenfelser R, Tan CM, Komosinski ME, Ma'ayan A. Clark NR, et al. BMC Syst Biol. 2012 Jul 23;6:89. doi: 10.1186/1752-0509-6-89. BMC Syst Biol. 2012. PMID: 22824380 Free PMC article.

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