Park PJ - Search Results

1

Next-generation sequencing-based detection of germline L1-mediated transductions.

Tica J, Lee E, Untergasser A, Meiers S, Garfield DA, Gokcumen O, Furlong EE, Park PJ, Stütz AM, Korbel JO. Tica J, et al. Among authors: park pj. BMC Genomics. 2016 May 10;17:342. doi: 10.1186/s12864-016-2670-x. BMC Genomics. 2016. PMID: 27161561 Free PMC article.

2

rSW-seq: algorithm for detection of copy number alterations in deep sequencing data.

Kim TM, Luquette LJ, Xi R, Park PJ. Kim TM, et al. Among authors: park pj. BMC Bioinformatics. 2010 Aug 18;11:432. doi: 10.1186/1471-2105-11-432. BMC Bioinformatics. 2010. PMID: 20718989 Free PMC article.

3

Detecting structural variations in the human genome using next generation sequencing.

Xi R, Kim TM, Park PJ. Xi R, et al. Among authors: park pj. Brief Funct Genomics. 2010 Dec;9(5-6):405-15. doi: 10.1093/bfgp/elq025. Epub 2011 Jan 6. Brief Funct Genomics. 2010. PMID: 21216738 Free PMC article. Review.

4

ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis.

Ho JW, Bishop E, Karchenko PV, Nègre N, White KP, Park PJ. Ho JW, et al. Among authors: park pj. BMC Genomics. 2011 Feb 28;12:134. doi: 10.1186/1471-2164-12-134. BMC Genomics. 2011. PMID: 21356108 Free PMC article.

5

Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion.

Xi R, Hadjipanayis AG, Luquette LJ, Kim TM, Lee E, Zhang J, Johnson MD, Muzny DM, Wheeler DA, Gibbs RA, Kucherlapati R, Park PJ. Xi R, et al. Among authors: park pj. Proc Natl Acad Sci U S A. 2011 Nov 15;108(46):E1128-36. doi: 10.1073/pnas.1110574108. Epub 2011 Nov 7. Proc Natl Acad Sci U S A. 2011. PMID: 22065754 Free PMC article.

6

Landscape of somatic retrotransposition in human cancers.

Lee E, Iskow R, Yang L, Gokcumen O, Haseley P, Luquette LJ 3rd, Lohr JG, Harris CC, Ding L, Wilson RK, Wheeler DA, Gibbs RA, Kucherlapati R, Lee C, Kharchenko PV, Park PJ; Cancer Genome Atlas Research Network. Lee E, et al. Among authors: park pj. Science. 2012 Aug 24;337(6097):967-71. doi: 10.1126/science.1222077. Epub 2012 Jun 28. Science. 2012. PMID: 22745252 Free PMC article.

7

A survey of copy-number variation detection tools based on high-throughput sequencing data.

Xi R, Lee S, Park PJ. Xi R, et al. Among authors: park pj. Curr Protoc Hum Genet. 2012 Oct;Chapter 7:Unit7.19. doi: 10.1002/0471142905.hg0719s75. Curr Protoc Hum Genet. 2012. PMID: 23074071

8

Single-neuron sequencing analysis of L1 retrotransposition and somatic mutation in the human brain.

Evrony GD, Cai X, Lee E, Hills LB, Elhosary PC, Lehmann HS, Parker JJ, Atabay KD, Gilmore EC, Poduri A, Park PJ, Walsh CA. Evrony GD, et al. Among authors: park pj. Cell. 2012 Oct 26;151(3):483-96. doi: 10.1016/j.cell.2012.09.035. Cell. 2012. PMID: 23101622 Free PMC article.

9

Primate genome architecture influences structural variation mechanisms and functional consequences.

Gokcumen O, Tischler V, Tica J, Zhu Q, Iskow RC, Lee E, Fritz MH, Langdon A, Stütz AM, Pavlidis P, Benes V, Mills RE, Park PJ, Lee C, Korbel JO. Gokcumen O, et al. Among authors: park pj. Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15764-9. doi: 10.1073/pnas.1305904110. Epub 2013 Sep 6. Proc Natl Acad Sci U S A. 2013. PMID: 24014587 Free PMC article.

10

A genome-wide view of microsatellite instability: old stories of cancer mutations revisited with new sequencing technologies.

Kim TM, Park PJ. Kim TM, et al. Among authors: park pj. Cancer Res. 2014 Nov 15;74(22):6377-82. doi: 10.1158/0008-5472.CAN-14-1225. Epub 2014 Nov 4. Cancer Res. 2014. PMID: 25371413 Free PMC article.

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