Dobbs D - Search Results

1

A Plasmodium-like virulence effector of the soybean cyst nematode suppresses plant innate immunity.

Noon JB, Qi M, Sill DN, Muppirala U, Eves-van den Akker S, Maier TR, Dobbs D, Mitchum MG, Hewezi T, Baum TJ. Noon JB, et al. Among authors: dobbs d. New Phytol. 2016 Oct;212(2):444-60. doi: 10.1111/nph.14047. Epub 2016 Jun 6. New Phytol. 2016. PMID: 27265684 Free article.

2

A MOTIF-BASED METHOD FOR PREDICTING INTERFACIAL RESIDUES IN BOTH THE RNA AND PROTEIN COMPONENTS OF PROTEIN-RNA COMPLEXES.

Muppirala U, Lewis BA, Mann CM, Dobbs D. Muppirala U, et al. Among authors: dobbs d. Pac Symp Biocomput. 2016;21:445-455. Pac Symp Biocomput. 2016. PMID: 26776208 Free PMC article.

3

Computational Prediction of RNA-Protein Interactions.

Mann CM, Muppirala UK, Dobbs D. Mann CM, et al. Among authors: dobbs d. Methods Mol Biol. 2017;1543:169-185. doi: 10.1007/978-1-4939-6716-2_8. Methods Mol Biol. 2017. PMID: 28349426

4

Predicting RNA-protein interactions using only sequence information.

Muppirala UK, Honavar VG, Dobbs D. Muppirala UK, et al. Among authors: dobbs d. BMC Bioinformatics. 2011 Dec 22;12:489. doi: 10.1186/1471-2105-12-489. BMC Bioinformatics. 2011. PMID: 22192482 Free PMC article.

5

Sequence-Based Prediction of RNA-Binding Residues in Proteins.

Walia RR, El-Manzalawy Y, Honavar VG, Dobbs D. Walia RR, et al. Among authors: dobbs d. Methods Mol Biol. 2017;1484:205-235. doi: 10.1007/978-1-4939-6406-2_15. Methods Mol Biol. 2017. PMID: 27787829 Free PMC article.

6

HomPPI: a class of sequence homology based protein-protein interface prediction methods.

Xue LC, Dobbs D, Honavar V. Xue LC, et al. Among authors: dobbs d. BMC Bioinformatics. 2011 Jun 17;12:244. doi: 10.1186/1471-2105-12-244. BMC Bioinformatics. 2011. PMID: 21682895 Free PMC article.

7

Analysis of the EIAV Rev-responsive element (RRE) reveals a conserved RNA motif required for high affinity Rev binding in both HIV-1 and EIAV.

Lee JH, Culver G, Carpenter S, Dobbs D. Lee JH, et al. Among authors: dobbs d. PLoS One. 2008 Jun 4;3(6):e2272. doi: 10.1371/journal.pone.0002272. PLoS One. 2008. PMID: 18523581 Free PMC article.

8

Predicting protein-protein interface residues using local surface structural similarity.

Jordan RA, El-Manzalawy Y, Dobbs D, Honavar V. Jordan RA, et al. Among authors: dobbs d. BMC Bioinformatics. 2012 Mar 18;13:41. doi: 10.1186/1471-2105-13-41. BMC Bioinformatics. 2012. PMID: 22424103 Free PMC article.

9

In Silico Prediction of Linear B-Cell Epitopes on Proteins.

El-Manzalawy Y, Dobbs D, Honavar VG. El-Manzalawy Y, et al. Among authors: dobbs d. Methods Mol Biol. 2017;1484:255-264. doi: 10.1007/978-1-4939-6406-2_17. Methods Mol Biol. 2017. PMID: 27787831 Free PMC article.

10

Identification of a homogenous structural basis for oligomerization by retroviral Rev-like proteins.

Umunnakwe CN, Dorman KS, Dobbs D, Carpenter S. Umunnakwe CN, et al. Among authors: dobbs d. Retrovirology. 2017 Aug 22;14(1):40. doi: 10.1186/s12977-017-0366-1. Retrovirology. 2017. PMID: 28830558 Free PMC article.

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