Kavvas ES - Search Results

1

Evaluation of rate law approximations in bottom-up kinetic models of metabolism.

Du B, Zielinski DC, Kavvas ES, Dräger A, Tan J, Zhang Z, Ruggiero KE, Arzumanyan GA, Palsson BO. Du B, et al. Among authors: kavvas es. BMC Syst Biol. 2016 Jun 6;10(1):40. doi: 10.1186/s12918-016-0283-2. BMC Syst Biol. 2016. PMID: 27266508 Free PMC article.

2

Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa.

Fang X, Monk JM, Mih N, Du B, Sastry AV, Kavvas E, Seif Y, Smarr L, Palsson BO. Fang X, et al. BMC Syst Biol. 2018 Jun 11;12(1):66. doi: 10.1186/s12918-018-0587-5. BMC Syst Biol. 2018. PMID: 29890970 Free PMC article.

3

Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions.

Kavvas ES, Seif Y, Yurkovich JT, Norsigian C, Poudel S, Greenwald WW, Ghatak S, Palsson BO, Monk JM. Kavvas ES, et al. BMC Syst Biol. 2018 Mar 2;12(1):25. doi: 10.1186/s12918-018-0557-y. BMC Syst Biol. 2018. PMID: 29499714 Free PMC article.

4

ssbio: a Python framework for structural systems biology.

Mih N, Brunk E, Chen K, Catoiu E, Sastry A, Kavvas E, Monk JM, Zhang Z, Palsson BO. Mih N, et al. Bioinformatics. 2018 Jun 15;34(12):2155-2157. doi: 10.1093/bioinformatics/bty077. Bioinformatics. 2018. PMID: 29444205 Free PMC article.

5

Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens.

Hyun JC, Kavvas ES, Monk JM, Palsson BO. Hyun JC, et al. Among authors: kavvas es. PLoS Comput Biol. 2020 Mar 2;16(3):e1007608. doi: 10.1371/journal.pcbi.1007608. eCollection 2020 Mar. PLoS Comput Biol. 2020. PMID: 32119670 Free PMC article.

6

A biochemically-interpretable machine learning classifier for microbial GWAS.

Kavvas ES, Yang L, Monk JM, Heckmann D, Palsson BO. Kavvas ES, et al. Nat Commun. 2020 May 22;11(1):2580. doi: 10.1038/s41467-020-16310-9. Nat Commun. 2020. PMID: 32444610 Free PMC article.

7

Independent component analysis recovers consistent regulatory signals from disparate datasets.

Sastry AV, Hu A, Heckmann D, Poudel S, Kavvas E, Palsson BO. Sastry AV, et al. PLoS Comput Biol. 2021 Feb 2;17(2):e1008647. doi: 10.1371/journal.pcbi.1008647. eCollection 2021 Feb. PLoS Comput Biol. 2021. PMID: 33529205 Free PMC article.

8

iCN718, an Updated and Improved Genome-Scale Metabolic Network Reconstruction of Acinetobacter baumannii AYE.

Norsigian CJ, Kavvas E, Seif Y, Palsson BO, Monk JM. Norsigian CJ, et al. Front Genet. 2018 Apr 10;9:121. doi: 10.3389/fgene.2018.00121. eCollection 2018. Front Genet. 2018. PMID: 29692801 Free PMC article.

9

Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits.

Seif Y, Kavvas E, Lachance JC, Yurkovich JT, Nuccio SP, Fang X, Catoiu E, Raffatellu M, Palsson BO, Monk JM. Seif Y, et al. Nat Commun. 2018 Sep 14;9(1):3771. doi: 10.1038/s41467-018-06112-5. Nat Commun. 2018. PMID: 30218022 Free PMC article.

10

Systems Biology and Pangenome of Salmonella O-Antigens.

Seif Y, Monk JM, Machado H, Kavvas E, Palsson BO. Seif Y, et al. mBio. 2019 Aug 27;10(4):e01247-19. doi: 10.1128/mBio.01247-19. mBio. 2019. PMID: 31455646 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

14 results

Search Page

Filters