Zhang B - Search Results

1

PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq.

Wen B, Xu S, Zhou R, Zhang B, Wang X, Liu X, Xu X, Liu S. Wen B, et al. Among authors: zhang b. BMC Bioinformatics. 2016 Jun 17;17(1):244. doi: 10.1186/s12859-016-1133-3. BMC Bioinformatics. 2016. PMID: 27316337 Free PMC article.

2

Fast network centrality analysis using GPUs.

Shi Z, Zhang B. Shi Z, et al. Among authors: zhang b. BMC Bioinformatics. 2011 May 12;12:149. doi: 10.1186/1471-2105-12-149. BMC Bioinformatics. 2011. PMID: 21569426 Free PMC article.

3

Protein identification using customized protein sequence databases derived from RNA-Seq data.

Wang X, Slebos RJ, Wang D, Halvey PJ, Tabb DL, Liebler DC, Zhang B. Wang X, et al. Among authors: zhang b. J Proteome Res. 2012 Feb 3;11(2):1009-17. doi: 10.1021/pr200766z. Epub 2011 Dec 14. J Proteome Res. 2012. PMID: 22103967 Free PMC article.

4

customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search.

Wang X, Zhang B. Wang X, et al. Among authors: zhang b. Bioinformatics. 2013 Dec 15;29(24):3235-7. doi: 10.1093/bioinformatics/btt543. Epub 2013 Sep 20. Bioinformatics. 2013. PMID: 24058055 Free PMC article.

5

Proteogenomic analysis reveals unanticipated adaptations of colorectal tumor cells to deficiencies in DNA mismatch repair.

Halvey PJ, Wang X, Wang J, Bhat AA, Dhawan P, Li M, Zhang B, Liebler DC, Slebos RJ. Halvey PJ, et al. Among authors: zhang b. Cancer Res. 2014 Jan 1;74(1):387-97. doi: 10.1158/0008-5472.CAN-13-2488. Epub 2013 Nov 18. Cancer Res. 2014. PMID: 24247723 Free PMC article.

6

Integrating genomic, transcriptomic, and interactome data to improve Peptide and protein identification in shotgun proteomics.

Wang X, Zhang B. Wang X, et al. Among authors: zhang b. J Proteome Res. 2014 Jun 6;13(6):2715-23. doi: 10.1021/pr500194t. Epub 2014 May 12. J Proteome Res. 2014. PMID: 24792918 Free PMC article. Review.

7

Leveraging the complementary nature of RNA-Seq and shotgun proteomics data.

Wang X, Liu Q, Zhang B. Wang X, et al. Among authors: zhang b. Proteomics. 2014 Dec;14(23-24):2676-87. doi: 10.1002/pmic.201400184. Epub 2014 Nov 17. Proteomics. 2014. PMID: 25266668 Free PMC article.

8

Empowering biologists with multi-omics data: colorectal cancer as a paradigm.

Zhu J, Shi Z, Wang J, Zhang B. Zhu J, et al. Among authors: zhang b. Bioinformatics. 2015 May 1;31(9):1436-43. doi: 10.1093/bioinformatics/btu834. Epub 2014 Dec 18. Bioinformatics. 2015. PMID: 25527095 Free PMC article.

9

Identification of HPV integration and gene mutation in HeLa cell line by integrated analysis of RNA-Seq and MS/MS data.

Sun H, Chen C, Lian B, Zhang M, Wang X, Zhang B, Li Y, Yang P, Xie L. Sun H, et al. Among authors: zhang m, zhang b. J Proteome Res. 2015 Apr 3;14(4):1678-86. doi: 10.1021/pr500944c. Epub 2015 Mar 10. J Proteome Res. 2015. PMID: 25698088

10

Proteomic analysis of colon and rectal carcinoma using standard and customized databases.

Slebos RJ, Wang X, Wang X, Zhang B, Tabb DL, Liebler DC. Slebos RJ, et al. Among authors: zhang b. Sci Data. 2015 Jun 23;2:150022. doi: 10.1038/sdata.2015.22. eCollection 2015. Sci Data. 2015. PMID: 26110064 Free PMC article.

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