Colijn C - Search Results

1

Mapping Phylogenetic Trees to Reveal Distinct Patterns of Evolution.

Kendall M, Colijn C. Kendall M, et al. Among authors: colijn c. Mol Biol Evol. 2016 Oct;33(10):2735-43. doi: 10.1093/molbev/msw124. Epub 2016 Jun 24. Mol Biol Evol. 2016. PMID: 27343287 Free PMC article.

2

e3SIM: epidemiological-ecological-evolutionary simulation framework for genomic epidemiology.

Xu P, Liang S, Hahn A, Zhao V, Lo WT', Haller BC, Sobkowiak B, Chitwood MH, Colijn C, Cohen T, Rhee KY, Messer PW, Wells MT, Clark AG, Kim J. Xu P, et al. Among authors: colijn c. bioRxiv [Preprint]. 2024 Jul 2:2024.06.29.601123. doi: 10.1101/2024.06.29.601123. bioRxiv. 2024. PMID: 39005464 Free PMC article. Preprint.

3

Signatures of transmission in within-host M. tuberculosis variation.

Walter KS, Cohen T, Mathema B, Colijn C, Sobkowiak B, Comas I, Goig GA, Croda J, Andrews JR. Walter KS, et al. Among authors: colijn c. medRxiv [Preprint]. 2023 Dec 29:2023.12.28.23300451. doi: 10.1101/2023.12.28.23300451. medRxiv. 2023. Update in: Lancet Microbe. 2024 Nov 27:100936. doi: 10.1016/j.lanmic.2024.06.003 PMID: 38234741 Free PMC article. Updated. Preprint.

4

Spatial modeling of Mycobacterium tuberculosis transmission with dyadic genetic relatedness data.

Warren JL, Chitwood MH, Sobkowiak B, Colijn C, Cohen T. Warren JL, et al. Among authors: colijn c. Biometrics. 2023 Dec;79(4):3650-3663. doi: 10.1111/biom.13836. Epub 2023 Feb 15. Biometrics. 2023. PMID: 36745619 Free PMC article.

5

Genomic, clinical and immunity data join forces for public health.

Barton A, Colijn C. Barton A, et al. Among authors: colijn c. Nat Rev Microbiol. 2023 Oct;21(10):639. doi: 10.1038/s41579-023-00965-4. Nat Rev Microbiol. 2023. PMID: 37592055 No abstract available.

6

How the dynamics and structure of sexual contact networks shape pathogen phylogenies.

Robinson K, Fyson N, Cohen T, Fraser C, Colijn C. Robinson K, et al. Among authors: colijn c. PLoS Comput Biol. 2013;9(6):e1003105. doi: 10.1371/journal.pcbi.1003105. Epub 2013 Jun 20. PLoS Comput Biol. 2013. PMID: 23818840 Free PMC article.

7

Bayesian inference of infectious disease transmission from whole-genome sequence data.

Didelot X, Gardy J, Colijn C. Didelot X, et al. Among authors: colijn c. Mol Biol Evol. 2014 Jul;31(7):1869-79. doi: 10.1093/molbev/msu121. Epub 2014 Apr 8. Mol Biol Evol. 2014. PMID: 24714079 Free PMC article.

8

Phylogenetic tree shapes resolve disease transmission patterns.

Colijn C, Gardy J. Colijn C, et al. Evol Med Public Health. 2014 Jun 9;2014(1):96-108. doi: 10.1093/emph/eou018. Evol Med Public Health. 2014. PMID: 24916411 Free PMC article.

9

Effects of memory on the shapes of simple outbreak trees.

Plazzotta G, Kwan C, Boyd M, Colijn C. Plazzotta G, et al. Among authors: colijn c. Sci Rep. 2016 Feb 18;6:21159. doi: 10.1038/srep21159. Sci Rep. 2016. PMID: 26888437 Free PMC article.

10

Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.

Ratmann O, Hodcroft EB, Pickles M, Cori A, Hall M, Lycett S, Colijn C, Dearlove B, Didelot X, Frost S, Hossain AS, Joy JB, Kendall M, Kühnert D, Leventhal GE, Liang R, Plazzotta G, Poon AF, Rasmussen DA, Stadler T, Volz E, Weis C, Leigh Brown AJ, Fraser C; PANGEA-HIV Consortium. Ratmann O, et al. Among authors: colijn c. Mol Biol Evol. 2017 Jan;34(1):185-203. doi: 10.1093/molbev/msw217. Epub 2016 Oct 7. Mol Biol Evol. 2017. PMID: 28053012 Free PMC article.

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