Kleinstein SH - Search Results

1

RAG1 targeting in the genome is dominated by chromatin interactions mediated by the non-core regions of RAG1 and RAG2.

Maman Y, Teng G, Seth R, Kleinstein SH, Schatz DG. Maman Y, et al. Among authors: kleinstein sh. Nucleic Acids Res. 2016 Nov 16;44(20):9624-9637. doi: 10.1093/nar/gkw633. Epub 2016 Jul 19. Nucleic Acids Res. 2016. PMID: 27436288 Free PMC article.

2

Two levels of protection for the B cell genome during somatic hypermutation.

Liu M, Duke JL, Richter DJ, Vinuesa CG, Goodnow CC, Kleinstein SH, Schatz DG. Liu M, et al. Among authors: kleinstein sh. Nature. 2008 Feb 14;451(7180):841-5. doi: 10.1038/nature06547. Nature. 2008. PMID: 18273020

3

Quantifying selection in high-throughput Immunoglobulin sequencing data sets.

Yaari G, Uduman M, Kleinstein SH. Yaari G, et al. Among authors: kleinstein sh. Nucleic Acids Res. 2012 Sep 1;40(17):e134. doi: 10.1093/nar/gks457. Epub 2012 May 27. Nucleic Acids Res. 2012. PMID: 22641856 Free PMC article.

4

Identification of core DNA elements that target somatic hypermutation.

Kohler KM, McDonald JJ, Duke JL, Arakawa H, Tan S, Kleinstein SH, Buerstedde JM, Schatz DG. Kohler KM, et al. Among authors: kleinstein sh. J Immunol. 2012 Dec 1;189(11):5314-26. doi: 10.4049/jimmunol.1202082. Epub 2012 Oct 19. J Immunol. 2012. PMID: 23087403 Free PMC article.

5

Multiple transcription factor binding sites predict AID targeting in non-Ig genes.

Duke JL, Liu M, Yaari G, Khalil AM, Tomayko MM, Shlomchik MJ, Schatz DG, Kleinstein SH. Duke JL, et al. Among authors: kleinstein sh. J Immunol. 2013 Apr 15;190(8):3878-88. doi: 10.4049/jimmunol.1202547. Epub 2013 Mar 20. J Immunol. 2013. PMID: 23514741 Free PMC article.

6

Quantitative set analysis for gene expression: a method to quantify gene set differential expression including gene-gene correlations.

Yaari G, Bolen CR, Thakar J, Kleinstein SH. Yaari G, et al. Among authors: kleinstein sh. Nucleic Acids Res. 2013 Oct;41(18):e170. doi: 10.1093/nar/gkt660. Epub 2013 Aug 5. Nucleic Acids Res. 2013. PMID: 23921631 Free PMC article.

7

Language model-based B cell receptor sequence embeddings can effectively encode receptor specificity.

Wang M, Patsenker J, Li H, Kluger Y, Kleinstein SH. Wang M, et al. Among authors: kleinstein sh. Nucleic Acids Res. 2024 Jan 25;52(2):548-557. doi: 10.1093/nar/gkad1128. Nucleic Acids Res. 2024. PMID: 38109302 Free PMC article.

8

Detecting selection in immunoglobulin sequences.

Uduman M, Yaari G, Hershberg U, Stern JA, Shlomchik MJ, Kleinstein SH. Uduman M, et al. Among authors: kleinstein sh. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W499-504. doi: 10.1093/nar/gkr413. Epub 2011 Jun 10. Nucleic Acids Res. 2011. PMID: 21665923 Free PMC article.

9

Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles.

Gadala-Maria D, Yaari G, Uduman M, Kleinstein SH. Gadala-Maria D, et al. Among authors: kleinstein sh. Proc Natl Acad Sci U S A. 2015 Feb 24;112(8):E862-70. doi: 10.1073/pnas.1417683112. Epub 2015 Feb 9. Proc Natl Acad Sci U S A. 2015. PMID: 25675496 Free PMC article.

10

Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data.

Gupta NT, Vander Heiden JA, Uduman M, Gadala-Maria D, Yaari G, Kleinstein SH. Gupta NT, et al. Among authors: kleinstein sh. Bioinformatics. 2015 Oct 15;31(20):3356-8. doi: 10.1093/bioinformatics/btv359. Epub 2015 Jun 10. Bioinformatics. 2015. PMID: 26069265 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

195 results

Search Page

Filters