Kojima K - Search Results

1

Fine-mapping analysis revealed complex pleiotropic effect and tissue-specific regulatory mechanism of TNFSF15 in primary biliary cholangitis, Crohn's disease and leprosy.

Sun Y, Irwanto A, Toyo-Oka L, Hong M, Liu H, Andiappan AK, Choi H, Hitomi Y, Yu G, Yu Y, Bao F, Wang C, Fu X, Yue Z, Wang H, Zhang H, Kawashima M, Kojima K, Nagasaki M, Nakamura M, Yang SK, Ye BD, Denise Y, Rotzschke O, Song K, Tokunaga K, Zhang F, Liu J. Sun Y, et al. Among authors: kojima k. Sci Rep. 2016 Aug 10;6:31429. doi: 10.1038/srep31429. Sci Rep. 2016. PMID: 27507062 Free PMC article.

2

An efficient grid layout algorithm for biological networks utilizing various biological attributes.

Kojima K, Nagasaki M, Jeong E, Kato M, Miyano S. Kojima K, et al. BMC Bioinformatics. 2007 Mar 6;8:76. doi: 10.1186/1471-2105-8-76. BMC Bioinformatics. 2007. PMID: 17338825 Free PMC article.

3

Fast grid layout algorithm for biological networks with sweep calculation.

Kojima K, Nagasaki M, Miyano S. Kojima K, et al. Bioinformatics. 2008 Jun 15;24(12):1433-41. doi: 10.1093/bioinformatics/btn196. Epub 2008 Apr 18. Bioinformatics. 2008. PMID: 18424458

4

An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information.

Kojima K, Nagasaki M, Miyano S. Kojima K, et al. BMC Bioinformatics. 2010 Jun 18;11:335. doi: 10.1186/1471-2105-11-335. BMC Bioinformatics. 2010. PMID: 20565884 Free PMC article.

5

Cell illustrator 4.0: a computational platform for systems biology.

Nagasaki M, Saito A, Jeong E, Li C, Kojima K, Ikeda E, Miyano S. Nagasaki M, et al. Among authors: kojima k. Stud Health Technol Inform. 2011;162:160-81. Stud Health Technol Inform. 2011. PMID: 21685571

6

Gene regulatory network clustering for graph layout based on microarray gene expression data.

Kojima K, Imoto S, Nagasaki M, Miyano S. Kojima K, et al. Genome Inform. 2010;24:84-95. Genome Inform. 2010. PMID: 22081591 Free article.

7

Cell Illustrator 4.0: a computational platform for systems biology.

Nagasaki M, Saito A, Jeong E, Li C, Kojima K, Ikeda E, Miyano S. Nagasaki M, et al. Among authors: kojima k. In Silico Biol. 2010;10(1):5-26. doi: 10.3233/ISB-2010-0415. In Silico Biol. 2010. PMID: 22430219

8

TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference.

Nariai N, Hirose O, Kojima K, Nagasaki M. Nariai N, et al. Among authors: kojima k. Bioinformatics. 2013 Sep 15;29(18):2292-9. doi: 10.1093/bioinformatics/btt381. Epub 2013 Jul 2. Bioinformatics. 2013. PMID: 23821651

9

A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads.

Kojima K, Nariai N, Mimori T, Takahashi M, Yamaguchi-Kabata Y, Sato Y, Nagasaki M. Kojima K, et al. Bioinformatics. 2013 Nov 15;29(22):2835-43. doi: 10.1093/bioinformatics/btt503. Epub 2013 Sep 3. Bioinformatics. 2013. PMID: 24002111

10

Identification of acquired mutations by whole-genome sequencing in GATA-2 deficiency evolving into myelodysplasia and acute leukemia.

Fujiwara T, Fukuhara N, Funayama R, Nariai N, Kamata M, Nagashima T, Kojima K, Onishi Y, Sasahara Y, Ishizawa K, Nagasaki M, Nakayama K, Harigae H. Fujiwara T, et al. Among authors: kojima k. Ann Hematol. 2014 Sep;93(9):1515-22. doi: 10.1007/s00277-014-2090-4. Epub 2014 Apr 30. Ann Hematol. 2014. PMID: 24782121 Free PMC article.

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