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Page 1
Comparative genomics of biotechnologically important yeasts.
Riley R, Haridas S, Wolfe KH, Lopes MR, Hittinger CT, Göker M, Salamov AA, Wisecaver JH, Long TM, Calvey CH, Aerts AL, Barry KW, Choi C, Clum A, Coughlan AY, Deshpande S, Douglass AP, Hanson SJ, Klenk HP, LaButti KM, Lapidus A, Lindquist EA, Lipzen AM, Meier-Kolthoff JP, Ohm RA, Otillar RP, Pangilinan JL, Peng Y, Rokas A, Rosa CA, Scheuner C, Sibirny AA, Slot JC, Stielow JB, Sun H, Kurtzman CP, Blackwell M, Grigoriev IV, Jeffries TW. Riley R, et al. Among authors: clum a. Proc Natl Acad Sci U S A. 2016 Aug 30;113(35):9882-7. doi: 10.1073/pnas.1603941113. Epub 2016 Aug 17. Proc Natl Acad Sci U S A. 2016. PMID: 27535936 Free PMC article.
One bacterial cell, one complete genome.
Woyke T, Tighe D, Mavromatis K, Clum A, Copeland A, Schackwitz W, Lapidus A, Wu D, McCutcheon JP, McDonald BR, Moran NA, Bristow J, Cheng JF. Woyke T, et al. Among authors: clum a. PLoS One. 2010 Apr 23;5(4):e10314. doi: 10.1371/journal.pone.0010314. PLoS One. 2010. PMID: 20428247 Free PMC article.
Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems.
van Passel MW, Kant R, Palva A, Copeland A, Lucas S, Lapidus A, Glavina del Rio T, Pitluck S, Goltsman E, Clum A, Sun H, Schmutz J, Larimer FW, Land ML, Hauser L, Kyrpides N, Mikhailova N, Richardson PP, Janssen PH, de Vos WM, Smidt H. van Passel MW, et al. Among authors: clum a. J Bacteriol. 2011 May;193(9):2367-8. doi: 10.1128/JB.00228-11. Epub 2011 Mar 11. J Bacteriol. 2011. PMID: 21398538 Free PMC article.
Genomes of three methylotrophs from a single niche reveal the genetic and metabolic divergence of the methylophilaceae.
Lapidus A, Clum A, Labutti K, Kaluzhnaya MG, Lim S, Beck DA, Glavina Del Rio T, Nolan M, Mavromatis K, Huntemann M, Lucas S, Lidstrom ME, Ivanova N, Chistoserdova L. Lapidus A, et al. Among authors: clum a. J Bacteriol. 2011 Aug;193(15):3757-64. doi: 10.1128/JB.00404-11. Epub 2011 May 27. J Bacteriol. 2011. PMID: 21622745 Free PMC article.
Comparative genomics of xylose-fermenting fungi for enhanced biofuel production.
Wohlbach DJ, Kuo A, Sato TK, Potts KM, Salamov AA, Labutti KM, Sun H, Clum A, Pangilinan JL, Lindquist EA, Lucas S, Lapidus A, Jin M, Gunawan C, Balan V, Dale BE, Jeffries TW, Zinkel R, Barry KW, Grigoriev IV, Gasch AP. Wohlbach DJ, et al. Among authors: clum a. Proc Natl Acad Sci U S A. 2011 Aug 9;108(32):13212-7. doi: 10.1073/pnas.1103039108. Epub 2011 Jul 25. Proc Natl Acad Sci U S A. 2011. PMID: 21788494 Free PMC article.
Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives.
Brown SD, Klingeman DM, Johnson CM, Clum A, Aerts A, Salamov A, Sharma A, Zane M, Barry K, Grigoriev IV, Davison BH, Lynd LR, Gilna P, Hau H, Hogsett DA, Froehlich AC. Brown SD, et al. Among authors: clum a. Genome Announc. 2013 Jun 27;1(3):e00323-13. doi: 10.1128/genomeA.00323-13. Genome Announc. 2013. PMID: 23792743 Free PMC article.
Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae.
Toome M, Ohm RA, Riley RW, James TY, Lazarus KL, Henrissat B, Albu S, Boyd A, Chow J, Clum A, Heller G, Lipzen A, Nolan M, Sandor L, Zvenigorodsky N, Grigoriev IV, Spatafora JW, Aime MC. Toome M, et al. Among authors: clum a. New Phytol. 2014 Apr;202(2):554-564. doi: 10.1111/nph.12653. Epub 2013 Dec 24. New Phytol. 2014. PMID: 24372469 Free article.
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.
Kohler A, Kuo A, Nagy LG, Morin E, Barry KW, Buscot F, Canbäck B, Choi C, Cichocki N, Clum A, Colpaert J, Copeland A, Costa MD, Doré J, Floudas D, Gay G, Girlanda M, Henrissat B, Herrmann S, Hess J, Högberg N, Johansson T, Khouja HR, LaButti K, Lahrmann U, Levasseur A, Lindquist EA, Lipzen A, Marmeisse R, Martino E, Murat C, Ngan CY, Nehls U, Plett JM, Pringle A, Ohm RA, Perotto S, Peter M, Riley R, Rineau F, Ruytinx J, Salamov A, Shah F, Sun H, Tarkka M, Tritt A, Veneault-Fourrey C, Zuccaro A; Mycorrhizal Genomics Initiative Consortium; Tunlid A, Grigoriev IV, Hibbett DS, Martin F. Kohler A, et al. Among authors: clum a. Nat Genet. 2015 Apr;47(4):410-5. doi: 10.1038/ng.3223. Epub 2015 Feb 23. Nat Genet. 2015. PMID: 25706625 Free article.
119 results