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Page 1
An expanded evaluation of protein function prediction methods shows an improvement in accuracy.
Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Törönen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, Sedeño-Cortés AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fernández JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehma… See abstract for full author list ➔ Jiang Y, et al. Genome Biol. 2016 Sep 7;17(1):184. doi: 10.1186/s13059-016-1037-6. Genome Biol. 2016. PMID: 27604469 Free PMC article.
Evaluation of residue-residue contact prediction in CASP10.
Monastyrskyy B, D'Andrea D, Fidelis K, Tramontano A, Kryshtafovych A. Monastyrskyy B, et al. Proteins. 2014 Feb;82 Suppl 2(0 2):138-53. doi: 10.1002/prot.24340. Epub 2013 Aug 31. Proteins. 2014. PMID: 23760879 Free PMC article.
Correction for Ballarino et al., "Novel Long Noncoding RNAs (lncRNAs) in Myogenesis: a miR-31 Overlapping lncRNA Transcript Controls Myoblast Differentiation".
Ballarino M, Cazzella V, D'Andrea D, Grassi L, Bisceglie L, Cipriano A, Santini T, Pinnarò C, Morlando M, Tramontano A, Bozzoni I. Ballarino M, et al. Mol Cell Biol. 2018 May 29;38(12):e00167-18. doi: 10.1128/MCB.00167-18. Print 2018 Jun 15. Mol Cell Biol. 2018. PMID: 29844107 Free PMC article. No abstract available.
Genome-wide identification of direct HBx genomic targets.
Guerrieri F, Belloni L, D'Andrea D, Pediconi N, Le Pera L, Testoni B, Scisciani C, Floriot O, Zoulim F, Tramontano A, Levrero M. Guerrieri F, et al. BMC Genomics. 2017 Feb 17;18(1):184. doi: 10.1186/s12864-017-3561-5. BMC Genomics. 2017. PMID: 28212627 Free PMC article.
The transcriptome and miRNome profiling of glioblastoma tissues and peritumoral regions highlights molecular pathways shared by tumors and surrounding areas and reveals differences between short-term and long-term survivors.
Fazi B, Felsani A, Grassi L, Moles A, D'Andrea D, Toschi N, Sicari D, De Bonis P, Anile C, Guerrisi MG, Luca E, Farace MG, Maira G, Ciafré SA, Mangiola A. Fazi B, et al. Oncotarget. 2015 Sep 8;6(26):22526-52. doi: 10.18632/oncotarget.4151. Oncotarget. 2015. PMID: 26188123 Free PMC article.
Foxm1 controls a pro-stemness microRNA network in neural stem cells.
Besharat ZM, Abballe L, Cicconardi F, Bhutkar A, Grassi L, Le Pera L, Moretti M, Chinappi M, D'Andrea D, Mastronuzzi A, Ianari A, Vacca A, De Smaele E, Locatelli F, Po A, Miele E, Ferretti E. Besharat ZM, et al. Sci Rep. 2018 Feb 23;8(1):3523. doi: 10.1038/s41598-018-21876-y. Sci Rep. 2018. PMID: 29476172 Free PMC article.
326 results