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ShatterProof: operational detection and quantification of chromothripsis.
Govind SK, Zia A, Hennings-Yeomans PH, Watson JD, Fraser M, Anghel C, Wyatt AW, van der Kwast T, Collins CC, McPherson JD, Bristow RG, Boutros PC. Govind SK, et al. Among authors: boutros pc. BMC Bioinformatics. 2014 Mar 19;15:78. doi: 10.1186/1471-2105-15-78. BMC Bioinformatics. 2014. PMID: 24646301 Free PMC article.
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.
Alioto TS, Buchhalter I, Derdak S, Hutter B, Eldridge MD, Hovig E, Heisler LE, Beck TA, Simpson JT, Tonon L, Sertier AS, Patch AM, Jäger N, Ginsbach P, Drews R, Paramasivam N, Kabbe R, Chotewutmontri S, Diessl N, Previti C, Schmidt S, Brors B, Feuerbach L, Heinold M, Gröbner S, Korshunov A, Tarpey PS, Butler AP, Hinton J, Jones D, Menzies A, Raine K, Shepherd R, Stebbings L, Teague JW, Ribeca P, Giner FC, Beltran S, Raineri E, Dabad M, Heath SC, Gut M, Denroche RE, Harding NJ, Yamaguchi TN, Fujimoto A, Nakagawa H, Quesada V, Valdés-Mas R, Nakken S, Vodák D, Bower L, Lynch AG, Anderson CL, Waddell N, Pearson JV, Grimmond SM, Peto M, Spellman P, He M, Kandoth C, Lee S, Zhang J, Létourneau L, Ma S, Seth S, Torrents D, Xi L, Wheeler DA, López-Otín C, Campo E, Campbell PJ, Boutros PC, Puente XS, Gerhard DS, Pfister SM, McPherson JD, Hudson TJ, Schlesner M, Lichter P, Eils R, Jones DT, Gut IG. Alioto TS, et al. Among authors: boutros pc. Nat Commun. 2015 Dec 9;6:10001. doi: 10.1038/ncomms10001. Nat Commun. 2015. PMID: 26647970 Free PMC article.
BAMQL: a query language for extracting reads from BAM files.
Masella AP, Lalansingh CM, Sivasundaram P, Fraser M, Bristow RG, Boutros PC. Masella AP, et al. Among authors: boutros pc. BMC Bioinformatics. 2016 Aug 11;17:305. doi: 10.1186/s12859-016-1162-y. BMC Bioinformatics. 2016. PMID: 27516195 Free PMC article.
NanoStringNormCNV: pre-processing of NanoString CNV data.
Sendorek DH, Lalonde E, Yao CQ, Sabelnykova VY, Bristow RG, Boutros PC. Sendorek DH, et al. Among authors: boutros pc. Bioinformatics. 2018 Mar 15;34(6):1034-1036. doi: 10.1093/bioinformatics/btx707. Bioinformatics. 2018. PMID: 29112706 Free PMC article.
430 results