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Do Branch Lengths Help to Locate a Tree in a Phylogenetic Network?
Gambette P, van Iersel L, Kelk S, Pardi F, Scornavacca C. Gambette P, et al. Among authors: pardi f. Bull Math Biol. 2016 Sep;78(9):1773-1795. doi: 10.1007/s11538-016-0199-4. Epub 2016 Sep 22. Bull Math Biol. 2016. PMID: 27659024
Rearrangement moves on rooted phylogenetic networks.
Gambette P, van Iersel L, Jones M, Lafond M, Pardi F, Scornavacca C. Gambette P, et al. Among authors: pardi f. PLoS Comput Biol. 2017 Aug 1;13(8):e1005611. doi: 10.1371/journal.pcbi.1005611. eCollection 2017 Aug. PLoS Comput Biol. 2017. PMID: 28763439 Free PMC article.
On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo.
Rabier CE, Berry V, Stoltz M, Santos JD, Wang W, Glaszmann JC, Pardi F, Scornavacca C. Rabier CE, et al. Among authors: pardi f. PLoS Comput Biol. 2021 Sep 3;17(9):e1008380. doi: 10.1371/journal.pcbi.1008380. eCollection 2021 Sep. PLoS Comput Biol. 2021. PMID: 34478440 Free PMC article.
Combinatorics of distance-based tree inference.
Pardi F, Gascuel O. Pardi F, et al. Proc Natl Acad Sci U S A. 2012 Oct 9;109(41):16443-8. doi: 10.1073/pnas.1118368109. Epub 2012 Sep 25. Proc Natl Acad Sci U S A. 2012. PMID: 23012403 Free PMC article.
35 results