Li B - Search Results

1

The single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data.

Joseph SJ, Li B, Petit Iii RA, Qin ZS, Darrow L, Read TD. Joseph SJ, et al. Among authors: li b. PeerJ. 2016 Oct 18;4:e2571. doi: 10.7717/peerj.2571. eCollection 2016. PeerJ. 2016. PMID: 27781166 Free PMC article.

2

Direct amplification, sequencing and profiling of Chlamydia trachomatis strains in single and mixed infection clinical samples.

Joseph SJ, Li B, Ghonasgi T, Haase CP, Qin ZS, Dean D, Read TD. Joseph SJ, et al. Among authors: li b. PLoS One. 2014 Jun 27;9(6):e99290. doi: 10.1371/journal.pone.0099290. eCollection 2014. PLoS One. 2014. PMID: 24971628 Free PMC article.

3

Improving Hierarchical Models Using Historical Data with Applications in High-Throughput Genomics Data Analysis.

Li B, Li Y, Qin ZS. Li B, et al. Among authors: li y. Stat Biosci. 2017 Jun;9(1):73-90. doi: 10.1007/s12561-016-9156-x. Epub 2016 Jul 8. Stat Biosci. 2017. PMID: 28919931 Free PMC article.

4

Bayesian inference with historical data-based informative priors improves detection of differentially expressed genes.

Li B, Sun Z, He Q, Zhu Y, Qin ZS. Li B, et al. Bioinformatics. 2016 Mar 1;32(5):682-9. doi: 10.1093/bioinformatics/btv631. Epub 2015 Oct 30. Bioinformatics. 2016. PMID: 26519502 Free PMC article.

5

Base-resolution methylation patterns accurately predict transcription factor bindings in vivo.

Xu T, Li B, Zhao M, Szulwach KE, Street RC, Lin L, Yao B, Zhang F, Jin P, Wu H, Qin ZS. Xu T, et al. Among authors: li b. Nucleic Acids Res. 2015 Mar 11;43(5):2757-66. doi: 10.1093/nar/gkv151. Epub 2015 Feb 26. Nucleic Acids Res. 2015. PMID: 25722376 Free PMC article.

6

Detection of differentially methylated regions from whole-genome bisulfite sequencing data without replicates.

Wu H, Xu T, Feng H, Chen L, Li B, Yao B, Qin Z, Jin P, Conneely KN. Wu H, et al. Among authors: li b. Nucleic Acids Res. 2015 Dec 2;43(21):e141. doi: 10.1093/nar/gkv715. Epub 2015 Jul 15. Nucleic Acids Res. 2015. PMID: 26184873 Free PMC article.

7

A comprehensive review of computational prediction of genome-wide features.

Xu T, Zheng X, Li B, Jin P, Qin Z, Wu H. Xu T, et al. Among authors: li b. Brief Bioinform. 2020 Jan 17;21(1):120-134. doi: 10.1093/bib/bby110. Brief Bioinform. 2020. PMID: 30462144 Free PMC article.

8

RT States: systematic annotation of the human genome using cell type-specific replication timing programs.

Poulet A, Li B, Dubos T, Rivera-Mulia JC, Gilbert DM, Qin ZS. Poulet A, et al. Among authors: li b. Bioinformatics. 2019 Jul 1;35(13):2167-2176. doi: 10.1093/bioinformatics/bty957. Bioinformatics. 2019. PMID: 30475980 Free PMC article.

9

Statistical challenges in analyzing methylation and long-range chromosomal interaction data.

Qin Z, Li B, Conneely KN, Wu H, Hu M, Ayyala D, Park Y, Jin VX, Zhang F, Zhang H, Li L, Lin S. Qin Z, et al. Among authors: li l, li b. Stat Biosci. 2016 Oct;8(2):284-309. doi: 10.1007/s12561-016-9145-0. Epub 2016 Mar 7. Stat Biosci. 2016. PMID: 28008337 Free PMC article.

10

Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment.

Dileep V, Wilson KA, Marchal C, Lyu X, Zhao PA, Li B, Poulet A, Bartlett DA, Rivera-Mulia JC, Qin ZS, Robins AJ, Schulz TC, Kulik MJ, McCord RP, Dekker J, Dalton S, Corces VG, Gilbert DM. Dileep V, et al. Among authors: li b. Stem Cell Reports. 2019 Jul 9;13(1):193-206. doi: 10.1016/j.stemcr.2019.05.021. Epub 2019 Jun 20. Stem Cell Reports. 2019. PMID: 31231024 Free PMC article.

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