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RNAcentral: a comprehensive database of non-coding RNA sequences.
The RNAcentral Consortium; Petrov AI, Kay SJE, Kalvari I, Howe KL, Gray KA, Bruford EA, Kersey PJ, Cochrane G, Finn RD, Bateman A, Kozomara A, Griffiths-Jones S, Frankish A, Zwieb CW, Lau BY, Williams KP, Chan PP, Lowe TM, Cannone JJ, Gutell R, Machnicka MA, Bujnicki JM, Yoshihama M, Kenmochi N, Chai B, Cole JR, Szymanski M, Karlowski WM, Wood V, Huala E, Berardini TZ, Zhao Y, Chen R, Zhu W, Paraskevopoulou MD, Vlachos IS, Hatzigeorgiou AG, Ma L, Zhang Z, Puetz J, Stadler PF, McDonald D, Basu S, Fey P, Engel SR, Cherry JM, Volders PJ, Mestdagh P, Wower J, Clark MB, Quek XC, Dinger ME. The RNAcentral Consortium, et al. Among authors: paraskevopoulou md. Nucleic Acids Res. 2017 Jan 4;45(D1):D128-D134. doi: 10.1093/nar/gkw1008. Epub 2016 Oct 28. Nucleic Acids Res. 2017. PMID: 27794554 Free PMC article.
RNAcentral: a hub of information for non-coding RNA sequences.
The RNAcentral Consortium. The RNAcentral Consortium. Nucleic Acids Res. 2019 Jan 8;47(D1):D1250-D1251. doi: 10.1093/nar/gky1206. Nucleic Acids Res. 2019. PMID: 30535383 Free PMC article. No abstract available.
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts.
Paraskevopoulou MD, Vlachos IS, Karagkouni D, Georgakilas G, Kanellos I, Vergoulis T, Zagganas K, Tsanakas P, Floros E, Dalamagas T, Hatzigeorgiou AG. Paraskevopoulou MD, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D231-8. doi: 10.1093/nar/gkv1270. Epub 2015 Nov 26. Nucleic Acids Res. 2016. PMID: 26612864 Free PMC article.
DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators.
Georgakilas G, Vlachos IS, Zagganas K, Vergoulis T, Paraskevopoulou MD, Kanellos I, Tsanakas P, Dellis D, Fevgas A, Dalamagas T, Hatzigeorgiou AG. Georgakilas G, et al. Among authors: paraskevopoulou md. Nucleic Acids Res. 2016 Jan 4;44(D1):D190-5. doi: 10.1093/nar/gkv1254. Epub 2015 Nov 19. Nucleic Acids Res. 2016. PMID: 26586797 Free PMC article.
Analyzing MiRNA-LncRNA Interactions.
Paraskevopoulou MD, Hatzigeorgiou AG. Paraskevopoulou MD, et al. Methods Mol Biol. 2016;1402:271-286. doi: 10.1007/978-1-4939-3378-5_21. Methods Mol Biol. 2016. PMID: 26721498
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions.
Karagkouni D, Paraskevopoulou MD, Chatzopoulos S, Vlachos IS, Tastsoglou S, Kanellos I, Papadimitriou D, Kavakiotis I, Maniou S, Skoufos G, Vergoulis T, Dalamagas T, Hatzigeorgiou AG. Karagkouni D, et al. Among authors: paraskevopoulou md. Nucleic Acids Res. 2018 Jan 4;46(D1):D239-D245. doi: 10.1093/nar/gkx1141. Nucleic Acids Res. 2018. PMID: 29156006 Free PMC article.
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