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Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences.
Yu D, Ren Y, Uesaka M, Beavan AJS, Muffato M, Shen J, Li Y, Sato I, Wan W, Clark JW, Keating JN, Carlisle EM, Dearden RP, Giles S, Randle E, Sansom RS, Feuda R, Fleming JF, Sugahara F, Cummins C, Patricio M, Akanni W, D'Aniello S, Bertolucci C, Irie N, Alev C, Sheng G, de Mendoza A, Maeso I, Irimia M, Fromm B, Peterson KJ, Das S, Hirano M, Rast JP, Cooper MD, Paps J, Pisani D, Kuratani S, Martin FJ, Wang W, Donoghue PCJ, Zhang YE, Pascual-Anaya J. Yu D, et al. Among authors: fromm b. Nat Ecol Evol. 2024 Mar;8(3):519-535. doi: 10.1038/s41559-023-02299-z. Epub 2024 Jan 12. Nat Ecol Evol. 2024. PMID: 38216617 Free PMC article.
A genome resource for the marine annelid Platynereis dumerilii.
Mutemi KN, Simakov O, Pan L, Santangeli L, Null R, Handberg-Thorsager M, Vellutini BC, Peterson KJ, Fromm B, Larsson T, Savage E, Lopez MO, Hercog R, Provaznik J, Ordoñez-Rueda D, Azevedo N, Gazave E, Vervoort M, Tomancak P, Tan W, Winkler S, Benes V, Hui J, Helm C, Özpolat BD, Arendt D. Mutemi KN, et al. Among authors: fromm b. bioRxiv [Preprint]. 2024 Nov 11:2024.06.21.600153. doi: 10.1101/2024.06.21.600153. bioRxiv. 2024. PMID: 38948846 Free PMC article. Preprint.
Historical RNA expression profiles from the extinct Tasmanian tiger.
Mármol-Sánchez E, Fromm B, Oskolkov N, Pochon Z, Kalogeropoulos P, Eriksson E, Biryukova I, Sekar V, Ersmark E, Andersson B, Dalén L, Friedländer MR. Mármol-Sánchez E, et al. Among authors: fromm b. Genome Res. 2023 Aug;33(8):1299-1316. doi: 10.1101/gr.277663.123. Epub 2023 Jul 18. Genome Res. 2023. PMID: 37463752 Free PMC article.
microRNAs as cancer biomarkers.
Flatmark K, Høye E, Fromm B. Flatmark K, et al. Among authors: fromm b. Scand J Clin Lab Invest Suppl. 2016;245:S80-3. doi: 10.1080/00365513.2016.1210330. Epub 2016 Aug 9. Scand J Clin Lab Invest Suppl. 2016. PMID: 27542003
Extreme conservation of miRNA complements in opisthorchiids.
Ovchinnikov VY, Mordvinov VA, Fromm B. Ovchinnikov VY, et al. Among authors: fromm b. Parasitol Int. 2017 Dec;66(6):773-776. doi: 10.1016/j.parint.2017.09.006. Epub 2017 Sep 12. Parasitol Int. 2017. PMID: 28916307
Exploration of extracellular vesicles from Ascaris suum provides evidence of parasite-host cross talk.
Hansen EP, Fromm B, Andersen SD, Marcilla A, Andersen KL, Borup A, Williams AR, Jex AR, Gasser RB, Young ND, Hall RS, Stensballe A, Ovchinnikov V, Yan Y, Fredholm M, Thamsborg SM, Nejsum P. Hansen EP, et al. Among authors: fromm b. J Extracell Vesicles. 2019 Feb 14;8(1):1578116. doi: 10.1080/20013078.2019.1578116. eCollection 2019. J Extracell Vesicles. 2019. PMID: 30815237 Free PMC article.
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Desvignes T, Loher P, Eilbeck K, Ma J, Urgese G, Fromm B, Sydes J, Aparicio-Puerta E, Barrera V, Espín R, Thibord F, Bofill-De Ros X, Londin E, Telonis AG, Ficarra E, Friedländer MR, Postlethwait JH, Rigoutsos I, Hackenberg M, Vlachos IS, Halushka MK, Pantano L. Desvignes T, et al. Among authors: fromm b. Bioinformatics. 2020 Feb 1;36(3):698-703. doi: 10.1093/bioinformatics/btz675. Bioinformatics. 2020. PMID: 31504201 Free PMC article.
138 results