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Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clinical trial data.
Guinney J, Wang T, Laajala TD, Winner KK, Bare JC, Neto EC, Khan SA, Peddinti G, Airola A, Pahikkala T, Mirtti T, Yu T, Bot BM, Shen L, Abdallah K, Norman T, Friend S, Stolovitzky G, Soule H, Sweeney CJ, Ryan CJ, Scher HI, Sartor O, Xie Y, Aittokallio T, Zhou FL, Costello JC; Prostate Cancer Challenge DREAM Community. Guinney J, et al. Among authors: pahikkala t. Lancet Oncol. 2017 Jan;18(1):132-142. doi: 10.1016/S1470-2045(16)30560-5. Epub 2016 Nov 16. Lancet Oncol. 2017. PMID: 27864015 Free PMC article. Clinical Trial.
Toward more realistic drug-target interaction predictions.
Pahikkala T, Airola A, Pietilä S, Shakyawar S, Szwajda A, Tang J, Aittokallio T. Pahikkala T, et al. Brief Bioinform. 2015 Mar;16(2):325-37. doi: 10.1093/bib/bbu010. Epub 2014 Apr 9. Brief Bioinform. 2015. PMID: 24723570 Free PMC article.
Predicting patient acuity from electronic patient records.
Kontio E, Airola A, Pahikkala T, Lundgren-Laine H, Junttila K, Korvenranta H, Salakoski T, Salanterä S. Kontio E, et al. Among authors: pahikkala t. J Biomed Inform. 2014 Oct;51:35-40. doi: 10.1016/j.jbi.2014.04.001. Epub 2014 Apr 12. J Biomed Inform. 2014. PMID: 24726853 Free article.
Regularized machine learning in the genetic prediction of complex traits.
Okser S, Pahikkala T, Airola A, Salakoski T, Ripatti S, Aittokallio T. Okser S, et al. Among authors: pahikkala t. PLoS Genet. 2014 Nov 13;10(11):e1004754. doi: 10.1371/journal.pgen.1004754. eCollection 2014 Nov. PLoS Genet. 2014. PMID: 25393026 Free PMC article. No abstract available.
Fast Kronecker Product Kernel Methods via Generalized Vec Trick.
Airola A, Pahikkala T. Airola A, et al. Among authors: pahikkala t. IEEE Trans Neural Netw Learn Syst. 2018 Aug;29(8):3374-3387. doi: 10.1109/TNNLS.2017.2727545. Epub 2017 Aug 1. IEEE Trans Neural Netw Learn Syst. 2018. PMID: 28783645
58 results