Kishima Y - Search Results

1

Endogenous pararetroviruses in rice genomes as a fossil record useful for the emerging field of palaeovirology.

Chen S, Kishima Y. Chen S, et al. Among authors: kishima y. Mol Plant Pathol. 2016 Dec;17(9):1317-1320. doi: 10.1111/mpp.12490. Mol Plant Pathol. 2016. PMID: 27870389 Free PMC article. No abstract available.

2

Evolutionary force of AT-rich repeats to trap genomic and episomal DNAs into the rice genome: lessons from endogenous pararetrovirus.

Liu R, Koyanagi KO, Chen S, Kishima Y. Liu R, et al. Among authors: kishima y. Plant J. 2012 Dec;72(5):817-28. doi: 10.1111/tpj.12002. Epub 2012 Oct 12. Plant J. 2012. PMID: 22900922 Free article.

3

Rice genomes recorded ancient pararetrovirus activities: Virus genealogy and multiple origins of endogenization during rice speciation.

Chen S, Liu R, Koyanagi KO, Kishima Y. Chen S, et al. Among authors: kishima y. Virology. 2014 Dec;471-473:141-52. doi: 10.1016/j.virol.2014.09.014. Epub 2014 Nov 5. Virology. 2014. PMID: 25461539 Free article.

4

Genomic fossils reveal adaptation of non-autonomous pararetroviruses driven by concerted evolution of noncoding regulatory sequences.

Chen S, Zheng H, Kishima Y. Chen S, et al. Among authors: kishima y. PLoS Pathog. 2017 Jun 29;13(6):e1006413. doi: 10.1371/journal.ppat.1006413. eCollection 2017 Jun. PLoS Pathog. 2017. PMID: 28662199 Free PMC article.

5

Ancient Endogenous Pararetroviruses in Oryza Genomes Provide Insights into the Heterogeneity of Viral Gene Macroevolution.

Chen S, Saito N, Encabo JR, Yamada K, Choi IR, Kishima Y. Chen S, et al. Among authors: kishima y. Genome Biol Evol. 2018 Oct 1;10(10):2686-2696. doi: 10.1093/gbe/evy207. Genome Biol Evol. 2018. PMID: 30239708 Free PMC article.

6

Profiling SNP and Nucleotide Diversity to Characterize Mekong Delta Rice Landraces in Southeast Asian Populations.

Tam NT, Dwiyanti MS, Koide Y, Nagano AJ, Ky H, Tin HQ, Hien NL, Dung LV, Kishima Y. Tam NT, et al. Among authors: kishima y. Plant Genome. 2019 Nov;12(3):1-11. doi: 10.3835/plantgenome2019.06.0042. Plant Genome. 2019. PMID: 33016580 Free article.

7

Temporal changes in transcripts of miniature inverted-repeat transposable elements during rice endosperm development.

Nagata H, Ono A, Tonosaki K, Kawakatsu T, Sato Y, Yano K, Kishima Y, Kinoshita T. Nagata H, et al. Among authors: kishima y. Plant J. 2022 Mar;109(5):1035-1047. doi: 10.1111/tpj.15698. Plant J. 2022. PMID: 35128739 Free PMC article.

8

Phylogenetic analysis of endogenous viral elements in the rice genome reveals local chromosomal evolution in Oryza AA-genome species.

Saito N, Chen S, Kitajima K, Zhou Z, Koide Y, Encabo JR, Diaz MGQ, Choi IR, Koyanagi KO, Kishima Y. Saito N, et al. Among authors: kishima y. Front Plant Sci. 2023 Oct 27;14:1261705. doi: 10.3389/fpls.2023.1261705. eCollection 2023. Front Plant Sci. 2023. PMID: 37965031 Free PMC article.

9

Cryptic cytoplasmic male sterility-causing gene in the mitochondrial genome of common japonica rice.

Toriyama K, Iwai Y, Takeda S, Takatsuka A, Igarashi K, Furuta T, Chen S, Kanaoka Y, Kishima Y, Arimura SI, Kazama T. Toriyama K, et al. Among authors: kishima y. Plant J. 2024 Nov;120(3):941-949. doi: 10.1111/tpj.17028. Epub 2024 Sep 9. Plant J. 2024. PMID: 39250703

10

Structural conservation of the transposon Tam3 family in Antirrhinum majus and estimation of the number of copies able to transpose.

Kishima Y, Yamashita S, Martin C, Mikami T. Kishima Y, et al. Plant Mol Biol. 1999 Jan;39(2):299-308. doi: 10.1023/a:1006129413306. Plant Mol Biol. 1999. PMID: 10080696

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