Vingron M - Search Results

1

Corrigendum: Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity.

Schöne S, Jurk M, Helabad MB, Dror I, Lebars I, Kieffer B, Imhof P, Rohs R, Vingron M, Thomas-Chollier M, Meijsing SH. Schöne S, et al. Among authors: vingron m. Nat Commun. 2016 Nov 22;7:13784. doi: 10.1038/ncomms13784. Nat Commun. 2016. PMID: 27873998 Free PMC article. No abstract available.

2

Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs.

Thomas-Chollier M, Hufton A, Heinig M, O'Keeffe S, Masri NE, Roider HG, Manke T, Vingron M. Thomas-Chollier M, et al. Among authors: vingron m. Nat Protoc. 2011 Nov 3;6(12):1860-9. doi: 10.1038/nprot.2011.409. Nat Protoc. 2011. PMID: 22051799

3

A naturally occurring insertion of a single amino acid rewires transcriptional regulation by glucocorticoid receptor isoforms.

Thomas-Chollier M, Watson LC, Cooper SB, Pufall MA, Liu JS, Borzym K, Vingron M, Yamamoto KR, Meijsing SH. Thomas-Chollier M, et al. Among authors: vingron m. Proc Natl Acad Sci U S A. 2013 Oct 29;110(44):17826-31. doi: 10.1073/pnas.1316235110. Epub 2013 Oct 14. Proc Natl Acad Sci U S A. 2013. PMID: 24127590 Free PMC article.

4

ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors.

Starick SR, Ibn-Salem J, Jurk M, Hernandez C, Love MI, Chung HR, Vingron M, Thomas-Chollier M, Meijsing SH. Starick SR, et al. Among authors: vingron m. Genome Res. 2015 Jun;25(6):825-35. doi: 10.1101/gr.185157.114. Epub 2015 Feb 26. Genome Res. 2015. PMID: 25720775 Free PMC article.

5

Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity.

Schöne S, Jurk M, Helabad MB, Dror I, Lebars I, Kieffer B, Imhof P, Rohs R, Vingron M, Thomas-Chollier M, Meijsing SH. Schöne S, et al. Among authors: vingron m. Nat Commun. 2016 Sep 1;7:12621. doi: 10.1038/ncomms12621. Nat Commun. 2016. PMID: 27581526 Free PMC article.

6

Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation.

Love MI, Huska MR, Jurk M, Schöpflin R, Starick SR, Schwahn K, Cooper SB, Yamamoto KR, Thomas-Chollier M, Vingron M, Meijsing SH. Love MI, et al. Among authors: vingron m. Nucleic Acids Res. 2017 Feb 28;45(4):1805-1819. doi: 10.1093/nar/gkw1163. Nucleic Acids Res. 2017. PMID: 27903902 Free PMC article.

7

Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise.

Schöne S, Bothe M, Einfeldt E, Borschiwer M, Benner P, Vingron M, Thomas-Chollier M, Meijsing SH. Schöne S, et al. Among authors: vingron m. PLoS Genet. 2018 Nov 14;14(11):e1007793. doi: 10.1371/journal.pgen.1007793. eCollection 2018 Nov. PLoS Genet. 2018. PMID: 30427832 Free PMC article.

8

Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer-promoter contacts.

Thormann V, Rothkegel MC, Schöpflin R, Glaser LV, Djuric P, Li N, Chung HR, Schwahn K, Vingron M, Meijsing SH. Thormann V, et al. Among authors: vingron m. Nucleic Acids Res. 2018 Apr 6;46(6):2868-2882. doi: 10.1093/nar/gky051. Nucleic Acids Res. 2018. PMID: 29385519 Free PMC article.

9

Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer-promoter contacts.

Thormann V, Rothkegel MC, Schöpflin R, Glaser LV, Djuric P, Li N, Chung HR, Schwahn K, Vingron M, Meijsing SH. Thormann V, et al. Among authors: vingron m. Nucleic Acids Res. 2018 Apr 6;46(6):3258. doi: 10.1093/nar/gky122. Nucleic Acids Res. 2018. PMID: 29471333 Free PMC article. No abstract available.

10

Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq.

Glaser LV, Steiger M, Fuchs A, van Bömmel A, Einfeldt E, Chung HR, Vingron M, Meijsing SH. Glaser LV, et al. Among authors: vingron m. Nucleic Acids Res. 2021 Dec 2;49(21):12178-12195. doi: 10.1093/nar/gkab1100. Nucleic Acids Res. 2021. PMID: 34850108 Free PMC article.

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