Dokholyan NV - Search Results

1

Computational Protein Design Through Grafting and Stabilization.

Zhu C, Mowrey DD, Dokholyan NV. Zhu C, et al. Among authors: dokholyan nv. Methods Mol Biol. 2017;1529:227-241. doi: 10.1007/978-1-4939-6637-0_11. Methods Mol Biol. 2017. PMID: 27914054

2

Understanding hierarchical protein evolution from first principles.

Dokholyan NV, Shakhnovich EI. Dokholyan NV, et al. J Mol Biol. 2001 Sep 7;312(1):289-307. doi: 10.1006/jmbi.2001.4949. J Mol Biol. 2001. PMID: 11545603

3

Folding of Cu, Zn superoxide dismutase and familial amyotrophic lateral sclerosis.

Khare SD, Ding F, Dokholyan NV. Khare SD, et al. Among authors: dokholyan nv. J Mol Biol. 2003 Nov 28;334(3):515-25. doi: 10.1016/j.jmb.2003.09.069. J Mol Biol. 2003. PMID: 14623191

4

What is the protein design alphabet?

Dokholyan NV. Dokholyan NV. Proteins. 2004 Mar 1;54(4):622-8. doi: 10.1002/prot.10633. Proteins. 2004. PMID: 14997558

5

Can contact potentials reliably predict stability of proteins?

Khatun J, Khare SD, Dokholyan NV. Khatun J, et al. Among authors: dokholyan nv. J Mol Biol. 2004 Mar 5;336(5):1223-38. doi: 10.1016/j.jmb.2004.01.002. J Mol Biol. 2004. PMID: 15037081

6

Reconstruction of the src-SH3 protein domain transition state ensemble using multiscale molecular dynamics simulations.

Ding F, Guo W, Dokholyan NV, Shakhnovich EI, Shea JE. Ding F, et al. Among authors: dokholyan nv. J Mol Biol. 2005 Jul 29;350(5):1035-50. doi: 10.1016/j.jmb.2005.05.017. J Mol Biol. 2005. PMID: 15982666

7

Emergence of protein fold families through rational design.

Ding F, Dokholyan NV. Ding F, et al. Among authors: dokholyan nv. PLoS Comput Biol. 2006 Jul 7;2(7):e85. doi: 10.1371/journal.pcbi.0020085. Epub 2006 May 26. PLoS Comput Biol. 2006. PMID: 16839198 Free PMC article.

8

iFold: a platform for interactive folding simulations of proteins.

Sharma S, Ding F, Nie H, Watson D, Unnithan A, Lopp J, Pozefsky D, Dokholyan NV. Sharma S, et al. Among authors: dokholyan nv. Bioinformatics. 2006 Nov 1;22(21):2693-4. doi: 10.1093/bioinformatics/btl460. Epub 2006 Aug 29. Bioinformatics. 2006. PMID: 16940324

9

Modeling backbone flexibility improves protein stability estimation.

Yin S, Ding F, Dokholyan NV. Yin S, et al. Among authors: dokholyan nv. Structure. 2007 Dec;15(12):1567-76. doi: 10.1016/j.str.2007.09.024. Structure. 2007. PMID: 18073107 Free article.

10

Computational studies reveal phosphorylation-dependent changes in the unstructured R domain of CFTR.

Hegedus T, Serohijos AW, Dokholyan NV, He L, Riordan JR. Hegedus T, et al. Among authors: dokholyan nv. J Mol Biol. 2008 May 16;378(5):1052-63. doi: 10.1016/j.jmb.2008.03.033. Epub 2008 Mar 26. J Mol Biol. 2008. PMID: 18423665 Free PMC article.

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