Yu H - Search Results

1

Disease Model of GATA4 Mutation Reveals Transcription Factor Cooperativity in Human Cardiogenesis.

Ang YS, Rivas RN, Ribeiro AJS, Srivas R, Rivera J, Stone NR, Pratt K, Mohamed TMA, Fu JD, Spencer CI, Tippens ND, Li M, Narasimha A, Radzinsky E, Moon-Grady AJ, Yu H, Pruitt BL, Snyder MP, Srivastava D. Ang YS, et al. Among authors: yu h. Cell. 2016 Dec 15;167(7):1734-1749.e22. doi: 10.1016/j.cell.2016.11.033. Cell. 2016. PMID: 27984724 Free PMC article.

2

Genomic analysis of regulatory network dynamics reveals large topological changes.

Luscombe NM, Babu MM, Yu H, Snyder M, Teichmann SA, Gerstein M. Luscombe NM, et al. Among authors: yu h. Nature. 2004 Sep 16;431(7006):308-12. doi: 10.1038/nature02782. Nature. 2004. PMID: 15372033 Free article.

3

Diverse protein kinase interactions identified by protein microarrays reveal novel connections between cellular processes.

Fasolo J, Sboner A, Sun MG, Yu H, Chen R, Sharon D, Kim PM, Gerstein M, Snyder M. Fasolo J, et al. Among authors: yu h. Genes Dev. 2011 Apr 1;25(7):767-78. doi: 10.1101/gad.1998811. Genes Dev. 2011. PMID: 21460040 Free PMC article.

4

iRegNet3D: three-dimensional integrated regulatory network for the genomic analysis of coding and non-coding disease mutations.

Liang S, Tippens ND, Zhou Y, Mort M, Stenson PD, Cooper DN, Yu H. Liang S, et al. Among authors: yu h. Genome Biol. 2017 Jan 18;18(1):10. doi: 10.1186/s13059-016-1138-2. Genome Biol. 2017. PMID: 28100260 Free PMC article.

5

A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice.

Wierbowski SD, Vo TV, Falter-Braun P, Jobe TO, Kruse LH, Wei X, Liang J, Meyer MJ, Akturk N, Rivera-Erick CA, Cordero NA, Paramo MI, Shayhidin EE, Bertolotti M, Tippens ND, Akther K, Sharma R, Katayose Y, Salehi-Ashtiani K, Hao T, Ronald PC, Ecker JR, Schweitzer PA, Kikuchi S, Mizuno H, Hill DE, Vidal M, Moghe GD, McCouch SR, Yu H. Wierbowski SD, et al. Among authors: yu h. Proc Natl Acad Sci U S A. 2020 May 26;117(21):11836-11842. doi: 10.1073/pnas.1918068117. Epub 2020 May 12. Proc Natl Acad Sci U S A. 2020. PMID: 32398372 Free PMC article.

6

Transcription imparts architecture, function and logic to enhancer units.

Tippens ND, Liang J, Leung AK, Wierbowski SD, Ozer A, Booth JG, Lis JT, Yu H. Tippens ND, et al. Among authors: yu h. Nat Genet. 2020 Oct;52(10):1067-1075. doi: 10.1038/s41588-020-0686-2. Epub 2020 Sep 21. Nat Genet. 2020. PMID: 32958950 Free PMC article.

7

Target hub proteins serve as master regulators of development in yeast.

Borneman AR, Leigh-Bell JA, Yu H, Bertone P, Gerstein M, Snyder M. Borneman AR, et al. Among authors: yu h. Genes Dev. 2006 Feb 15;20(4):435-48. doi: 10.1101/gad.1389306. Epub 2006 Jan 31. Genes Dev. 2006. PMID: 16449570 Free PMC article.

8

Extrapolating traditional DNA microarray statistics to tiling and protein microarray technologies.

Royce TE, Rozowsky JS, Luscombe NM, Emanuelsson O, Yu H, Zhu X, Snyder M, Gerstein MB. Royce TE, et al. Among authors: yu h. Methods Enzymol. 2006;411:282-311. doi: 10.1016/S0076-6879(06)11015-0. Methods Enzymol. 2006. PMID: 16939796 Review.

9

Positional artifacts in microarrays: experimental verification and construction of COP, an automated detection tool.

Yu H, Nguyen K, Royce T, Qian J, Nelson K, Snyder M, Gerstein M. Yu H, et al. Nucleic Acids Res. 2007;35(2):e8. doi: 10.1093/nar/gkl871. Epub 2006 Dec 7. Nucleic Acids Res. 2007. PMID: 17158151 Free PMC article.

10

Divergence of transcription factor binding sites across related yeast species.

Borneman AR, Gianoulis TA, Zhang ZD, Yu H, Rozowsky J, Seringhaus MR, Wang LY, Gerstein M, Snyder M. Borneman AR, et al. Among authors: yu h. Science. 2007 Aug 10;317(5839):815-9. doi: 10.1126/science.1140748. Science. 2007. PMID: 17690298

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