Zhou WJ - Search Results

1

Open-pNovo: De Novo Peptide Sequencing with Thousands of Protein Modifications.

Yang H, Chi H, Zhou WJ, Zeng WF, He K, Liu C, Sun RX, He SM. Yang H, et al. Among authors: zhou wj. J Proteome Res. 2017 Feb 3;16(2):645-654. doi: 10.1021/acs.jproteome.6b00716. Epub 2017 Jan 12. J Proteome Res. 2017. PMID: 28019094

2

A rapid and easy protein N-terminal profiling strategy using (N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and StageTip.

Li Y, Wang Z, Zhou W, Zhang K, Ma J, Wu F, Ji J, Hong X, Deng Z, He S, Xu P. Li Y, et al. Proteomics. 2017 Jul;17(13-14). doi: 10.1002/pmic.201600481. Epub 2017 Jul 3. Proteomics. 2017. PMID: 28597999

3

pSite: Amino Acid Confidence Evaluation for Quality Control of De Novo Peptide Sequencing and Modification Site Localization.

Yang H, Chi H, Zhou WJ, Zeng WF, Liu C, Wang RM, Wang ZW, Niu XN, Chen ZL, He SM. Yang H, et al. Among authors: zhou wj. J Proteome Res. 2018 Jan 5;17(1):119-128. doi: 10.1021/acs.jproteome.7b00428. Epub 2017 Nov 21. J Proteome Res. 2018. PMID: 29130300

4

Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine.

Chi H, Liu C, Yang H, Zeng WF, Wu L, Zhou WJ, Wang RM, Niu XN, Ding YH, Zhang Y, Wang ZW, Chen ZL, Sun RX, Liu T, Tan GM, Dong MQ, Xu P, Zhang PH, He SM. Chi H, et al. Among authors: zhou wj. Nat Biotechnol. 2018 Oct 8. doi: 10.1038/nbt.4236. Online ahead of print. Nat Biotechnol. 2018. PMID: 30295672

5

pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics.

Zhou WJ, Yang H, Zeng WF, Zhang K, Chi H, He SM. Zhou WJ, et al. J Proteome Res. 2019 Jul 5;18(7):2747-2758. doi: 10.1021/acs.jproteome.8b00993. Epub 2019 Jun 24. J Proteome Res. 2019. PMID: 31244209

6

MS/MS Spectrum Prediction for Modified Peptides Using pDeep2 Trained by Transfer Learning.

Zeng WF, Zhou XX, Zhou WJ, Chi H, Zhan J, He SM. Zeng WF, et al. Among authors: zhou wj, zhou xx. Anal Chem. 2019 Aug 6;91(15):9724-9731. doi: 10.1021/acs.analchem.9b01262. Epub 2019 Jul 8. Anal Chem. 2019. PMID: 31283184

7

A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides.

Chen ZL, Meng JM, Cao Y, Yin JL, Fang RQ, Fan SB, Liu C, Zeng WF, Ding YH, Tan D, Wu L, Zhou WJ, Chi H, Sun RX, Dong MQ, He SM. Chen ZL, et al. Among authors: zhou wj. Nat Commun. 2019 Jul 30;10(1):3404. doi: 10.1038/s41467-019-11337-z. Nat Commun. 2019. PMID: 31363125 Free PMC article.

8

pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework.

Yang H, Chi H, Zeng WF, Zhou WJ, He SM. Yang H, et al. Among authors: zhou wj. Bioinformatics. 2019 Jul 15;35(14):i183-i190. doi: 10.1093/bioinformatics/btz366. Bioinformatics. 2019. PMID: 31510687 Free PMC article.

9

pValid 2: A deep learning based validation method for peptide identification in shotgun proteomics with increased discriminating power.

Zhou WJ, Wei ZH, He SM, Chi H. Zhou WJ, et al. J Proteomics. 2022 Jan 16;251:104414. doi: 10.1016/j.jprot.2021.104414. Epub 2021 Nov 2. J Proteomics. 2022. PMID: 34737111

10

Ac-LysargiNase efficiently helps genome reannotation of Mycolicibacterium smegmatis MC² 155.

Zhu H, Jiang S, Zhou W, Chi H, Sun J, Shi J, Zhang Z, Chang L, Yu L, Zhang L, Lyu Z, Xu P, Zhang Y. Zhu H, et al. J Proteomics. 2022 Jul 30;264:104622. doi: 10.1016/j.jprot.2022.104622. Epub 2022 May 19. J Proteomics. 2022. PMID: 35598869

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