Baker SE - Search Results

1

A molecular genetic toolbox for Yarrowia lipolytica.

Bredeweg EL, Pomraning KR, Dai Z, Nielsen J, Kerkhoven EJ, Baker SE. Bredeweg EL, et al. Among authors: baker se. Biotechnol Biofuels. 2017 Jan 3;10:2. doi: 10.1186/s13068-016-0687-7. eCollection 2017. Biotechnol Biofuels. 2017. PMID: 28066508 Free PMC article.

2

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88.

Andersen MR, Salazar MP, Schaap PJ, van de Vondervoort PJ, Culley D, Thykaer J, Frisvad JC, Nielsen KF, Albang R, Albermann K, Berka RM, Braus GH, Braus-Stromeyer SA, Corrochano LM, Dai Z, van Dijck PW, Hofmann G, Lasure LL, Magnuson JK, Menke H, Meijer M, Meijer SL, Nielsen JB, Nielsen ML, van Ooyen AJ, Pel HJ, Poulsen L, Samson RA, Stam H, Tsang A, van den Brink JM, Atkins A, Aerts A, Shapiro H, Pangilinan J, Salamov A, Lou Y, Lindquist E, Lucas S, Grimwood J, Grigoriev IV, Kubicek CP, Martinez D, van Peij NN, Roubos JA, Nielsen J, Baker SE. Andersen MR, et al. Among authors: baker se. Genome Res. 2011 Jun;21(6):885-97. doi: 10.1101/gr.112169.110. Epub 2011 May 4. Genome Res. 2011. PMID: 21543515 Free PMC article.

3

Mapping N-linked glycosylation sites in the secretome and whole cells of Aspergillus niger using hydrazide chemistry and mass spectrometry.

Wang L, Aryal UK, Dai Z, Mason AC, Monroe ME, Tian ZX, Zhou JY, Su D, Weitz KK, Liu T, Camp DG 2nd, Smith RD, Baker SE, Qian WJ. Wang L, et al. Among authors: baker se. J Proteome Res. 2012 Jan 1;11(1):143-56. doi: 10.1021/pr200916k. Epub 2011 Dec 2. J Proteome Res. 2012. PMID: 22136231 Free PMC article.

4

Harnessing glycosylation to improve cellulase activity.

Beckham GT, Dai Z, Matthews JF, Momany M, Payne CM, Adney WS, Baker SE, Himmel ME. Beckham GT, et al. Among authors: baker se. Curr Opin Biotechnol. 2012 Jun;23(3):338-45. doi: 10.1016/j.copbio.2011.11.030. Epub 2011 Dec 18. Curr Opin Biotechnol. 2012. PMID: 22186222 Review.

5

Resin-assisted enrichment of N-terminal peptides for characterizing proteolytic processing.

Kim JS, Dai Z, Aryal UK, Moore RJ, Camp DG 2nd, Baker SE, Smith RD, Qian WJ. Kim JS, et al. Among authors: baker se. Anal Chem. 2013 Jul 16;85(14):6826-32. doi: 10.1021/ac401000q. Epub 2013 Jun 27. Anal Chem. 2013. PMID: 23772796 Free PMC article.

6

Impact of alg3 gene deletion on growth, development, pigment production, protein secretion, and functions of recombinant Trichoderma reesei cellobiohydrolases in Aspergillus niger.

Dai Z, Aryal UK, Shukla A, Qian WJ, Smith RD, Magnuson JK, Adney WS, Beckham GT, Brunecky R, Himmel ME, Decker SR, Ju X, Zhang X, Baker SE. Dai Z, et al. Among authors: baker se. Fungal Genet Biol. 2013 Dec;61:120-32. doi: 10.1016/j.fgb.2013.09.004. Epub 2013 Sep 25. Fungal Genet Biol. 2013. PMID: 24076077

7

Comprehensive Metabolomic, Lipidomic and Microscopic Profiling of Yarrowia lipolytica during Lipid Accumulation Identifies Targets for Increased Lipogenesis.

Pomraning KR, Wei S, Karagiosis SA, Kim YM, Dohnalkova AC, Arey BW, Bredeweg EL, Orr G, Metz TO, Baker SE. Pomraning KR, et al. Among authors: baker se. PLoS One. 2015 Apr 23;10(4):e0123188. doi: 10.1371/journal.pone.0123188. eCollection 2015. PLoS One. 2015. PMID: 25905710 Free PMC article.

8

Genome Sequence and Annotation of Trichoderma parareesei, the Ancestor of the Cellulase Producer Trichoderma reesei.

Yang D, Pomraning K, Kopchinskiy A, Karimi Aghcheh R, Atanasova L, Chenthamara K, Baker SE, Zhang R, Shen Q, Freitag M, Kubicek CP, Druzhinina IS. Yang D, et al. Among authors: baker se. Genome Announc. 2015 Aug 13;3(4):e00885-15. doi: 10.1128/genomeA.00885-15. Genome Announc. 2015. PMID: 26272569 Free PMC article.

9

Compartmentalized microchannel array for high-throughput analysis of single cell polarized growth and dynamics.

Geng T, Bredeweg EL, Szymanski CJ, Liu B, Baker SE, Orr G, Evans JE, Kelly RT. Geng T, et al. Among authors: baker se. Sci Rep. 2015 Nov 4;5:16111. doi: 10.1038/srep16111. Sci Rep. 2015. PMID: 26530004 Free PMC article.

10

Identification of a Classical Mutant in the Industrial Host Aspergillus niger by Systems Genetics: LaeA Is Required for Citric Acid Production and Regulates the Formation of Some Secondary Metabolites.

Niu J, Arentshorst M, Nair PD, Dai Z, Baker SE, Frisvad JC, Nielsen KF, Punt PJ, Ram AF. Niu J, et al. Among authors: baker se. G3 (Bethesda). 2015 Nov 13;6(1):193-204. doi: 10.1534/g3.115.024067. G3 (Bethesda). 2015. PMID: 26566947 Free PMC article.

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