Jolley EA - Search Results

1

The loss of a hydrogen bond: Thermodynamic contributions of a non-standard nucleotide.

Jolley EA, Znosko BM. Jolley EA, et al. Nucleic Acids Res. 2017 Feb 17;45(3):1479-1487. doi: 10.1093/nar/gkw830. Nucleic Acids Res. 2017. PMID: 28180321 Free PMC article.

2

Effect of intercalator substituent and nucleotide sequence on the stability of DNA- and RNA-naphthalimide complexes.

Johnson CA, Hudson GA, Hardebeck LK, Jolley EA, Ren Y, Lewis M, Znosko BM. Johnson CA, et al. Among authors: jolley ea. Bioorg Med Chem. 2015 Jul 1;23(13):3586-91. doi: 10.1016/j.bmc.2015.04.030. Epub 2015 Apr 17. Bioorg Med Chem. 2015. PMID: 25960324

3

A Computational Model for Predicting Experimental RNA Nearest-Neighbor Free Energy Rankings: Inosine•Uridine Pairs.

Jolley EA, Lewis M, Znosko BM. Jolley EA, et al. Chem Phys Lett. 2015 Oct 16;639:157-60. doi: 10.1016/j.cplett.2015.09.005. Chem Phys Lett. 2015. PMID: 26525429 Free PMC article.

4

The effects of varying the substituent and DNA sequence on the stability of 4-substituted DNA-naphthalimide complexes.

Jolley EA, Hardebeck LKE, Ren Y, Adams MS, Lewis M, Znosko BM. Jolley EA, et al. Biophys Chem. 2018 Aug;239:29-37. doi: 10.1016/j.bpc.2018.04.008. Epub 2018 May 1. Biophys Chem. 2018. PMID: 29804029

5

Replacing salt correction factors with optimized RNA nearest-neighbour enthalpy and entropy parameters.

Ferreira I, Jolley EA, Znosko BM, Weber G. Ferreira I, et al. Among authors: jolley ea. Chem Phys. 2019 May 1;521:69-76. doi: 10.1016/j.chemphys.2019.01.016. Epub 2019 Jan 17. Chem Phys. 2019. PMID: 31598030 Free PMC article.

6

Upstream Flanking Sequence Assists Folding of an RNA Thermometer.

Jolley EA, Bormes KM, Bevilacqua PC. Jolley EA, et al. J Mol Biol. 2022 Sep 30;434(18):167786. doi: 10.1016/j.jmb.2022.167786. Epub 2022 Aug 8. J Mol Biol. 2022. PMID: 35952804 Free PMC article.

7

Structure-seq2 probing of RNA structure upon amino acid starvation reveals both known and novel RNA switches in Bacillus subtilis.

Ritchey LE, Tack DC, Yakhnin H, Jolley EA, Assmann SM, Bevilacqua PC, Babitzke P. Ritchey LE, et al. Among authors: jolley ea. RNA. 2020 Oct;26(10):1431-1447. doi: 10.1261/rna.075986.120. Epub 2020 Jul 1. RNA. 2020. PMID: 32611709 Free PMC article.

8

Single-cell probing of RNA structure.

Jolley EA, Bevilacqua PC. Jolley EA, et al. Nat Methods. 2024 Mar;21(3):377-378. doi: 10.1038/s41592-024-02178-w. Nat Methods. 2024. PMID: 38321343 No abstract available.

9

In vivo-like nearest neighbor parameters improve prediction of fractional RNA base-pairing in cells.

Sieg JP, Jolley EA, Huot MJ, Babitzke P, Bevilacqua PC. Sieg JP, et al. Among authors: jolley ea. Nucleic Acids Res. 2023 Nov 10;51(20):11298-11317. doi: 10.1093/nar/gkad807. Nucleic Acids Res. 2023. PMID: 37855684 Free PMC article.

10

In vivo structure probing of RNA in Archaea: novel insights into the ribosome structure of Methanosarcina acetivorans.

Williams AM, Jolley EA, Santiago-Martínez MG, Chan CX, Gutell RR, Ferry JG, Bevilacqua PC. Williams AM, et al. Among authors: jolley ea. RNA. 2023 Oct;29(10):1610-1620. doi: 10.1261/rna.079687.123. Epub 2023 Jul 25. RNA. 2023. PMID: 37491319 Free PMC article.

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