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Page 1
Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions.
Men Y, Yu K, Bælum J, Gao Y, Tremblay J, Prestat E, Stenuit B, Tringe SG, Jansson J, Zhang T, Alvarez-Cohen L. Men Y, et al. Among authors: tringe sg. Appl Environ Microbiol. 2017 Mar 31;83(8):e03508-16. doi: 10.1128/AEM.03508-16. Print 2017 Apr 15. Appl Environ Microbiol. 2017. PMID: 28188205 Free PMC article.
A call for standardized classification of metagenome projects.
Ivanova N, Tringe SG, Liolios K, Liu WT, Morrison N, Hugenholtz P, Kyrpides NC. Ivanova N, et al. Among authors: tringe sg. Environ Microbiol. 2010 Jul;12(7):1803-5. doi: 10.1111/j.1462-2920.2010.02270.x. Environ Microbiol. 2010. PMID: 20653767 Free article. Review. No abstract available.
Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill.
Baelum J, Borglin S, Chakraborty R, Fortney JL, Lamendella R, Mason OU, Auer M, Zemla M, Bill M, Conrad ME, Malfatti SA, Tringe SG, Holman HY, Hazen TC, Jansson JK. Baelum J, et al. Among authors: tringe sg. Environ Microbiol. 2012 Sep;14(9):2405-16. doi: 10.1111/j.1462-2920.2012.02780.x. Epub 2012 May 23. Environ Microbiol. 2012. PMID: 22616650 Free article.
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill.
Mason OU, Hazen TC, Borglin S, Chain PS, Dubinsky EA, Fortney JL, Han J, Holman HY, Hultman J, Lamendella R, Mackelprang R, Malfatti S, Tom LM, Tringe SG, Woyke T, Zhou J, Rubin EM, Jansson JK. Mason OU, et al. Among authors: tringe sg. ISME J. 2012 Sep;6(9):1715-27. doi: 10.1038/ismej.2012.59. Epub 2012 Jun 21. ISME J. 2012. PMID: 22717885 Free PMC article.
The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling.
Lindemann SR, Moran JJ, Stegen JC, Renslow RS, Hutchison JR, Cole JK, Dohnalkova AC, Tremblay J, Singh K, Malfatti SA, Chen F, Tringe SG, Beyenal H, Fredrickson JK. Lindemann SR, et al. Among authors: tringe sg. Front Microbiol. 2013 Nov 13;4:323. doi: 10.3389/fmicb.2013.00323. eCollection 2013. Front Microbiol. 2013. PMID: 24312082 Free PMC article.
Tackling soil diversity with the assembly of large, complex metagenomes.
Howe AC, Jansson JK, Malfatti SA, Tringe SG, Tiedje JM, Brown CT. Howe AC, et al. Among authors: tringe sg. Proc Natl Acad Sci U S A. 2014 Apr 1;111(13):4904-9. doi: 10.1073/pnas.1402564111. Epub 2014 Mar 14. Proc Natl Acad Sci U S A. 2014. PMID: 24632729 Free PMC article.
Metagenomes from two microbial consortia associated with Santa Barbara seep oil.
Hawley ER, Malfatti SA, Pagani I, Huntemann M, Chen A, Foster B, Copeland A, del Rio TG, Pati A, Jansson JR, Gilbert JA, Tringe SG, Lorenson TD, Hess M. Hawley ER, et al. Among authors: tringe sg. Mar Genomics. 2014 Dec;18 Pt B:97-9. doi: 10.1016/j.margen.2014.06.003. Epub 2014 Jun 20. Mar Genomics. 2014. PMID: 24958360
Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California.
Hawley ER, Piao H, Scott NM, Malfatti S, Pagani I, Huntemann M, Chen A, Glavina Del Rio T, Foster B, Copeland A, Jansson J, Pati A, Tringe S, Gilbert JA, Lorenson TD, Hess M. Hawley ER, et al. Stand Genomic Sci. 2014 Jan 2;9(3):1259-74. doi: 10.4056/sigs.5029016. eCollection 2014 Jun 15. Stand Genomic Sci. 2014. PMID: 25197496 Free PMC article.
FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus.
Prestat E, David MM, Hultman J, Taş N, Lamendella R, Dvornik J, Mackelprang R, Myrold DD, Jumpponen A, Tringe SG, Holman E, Mavromatis K, Jansson JK. Prestat E, et al. Among authors: tringe sg. Nucleic Acids Res. 2014 Oct 29;42(19):e145. doi: 10.1093/nar/gku702. Epub 2014 Sep 26. Nucleic Acids Res. 2014. PMID: 25260589 Free PMC article.
180 results