Fernandez-Alberti S - Search Results

1

Conformational diversity analysis reveals three functional mechanisms in proteins.

Monzon AM, Zea DJ, Fornasari MS, Saldaño TE, Fernandez-Alberti S, Tosatto SC, Parisi G. Monzon AM, et al. PLoS Comput Biol. 2017 Feb 13;13(2):e1005398. doi: 10.1371/journal.pcbi.1005398. eCollection 2017 Feb. PLoS Comput Biol. 2017. PMID: 28192432 Free PMC article.

2

Evolutionary conservation of protein backbone flexibility.

Maguid S, Fernández-Alberti S, Parisi G, Echave J. Maguid S, et al. J Mol Evol. 2006 Oct;63(4):448-57. doi: 10.1007/s00239-005-0209-x. Epub 2006 Oct 4. J Mol Evol. 2006. PMID: 17021932

3

Protein conformational diversity modulates sequence divergence.

Juritz E, Palopoli N, Fornasari MS, Fernandez-Alberti S, Parisi G. Juritz E, et al. Mol Biol Evol. 2013 Jan;30(1):79-87. doi: 10.1093/molbev/mss080. Epub 2012 Mar 6. Mol Biol Evol. 2013. PMID: 22396525

4

On the analysis and comparison of conformer-specific essential dynamics upon ligand binding to a protein.

Grosso M, Kalstein A, Parisi G, Roitberg AE, Fernandez-Alberti S. Grosso M, et al. J Chem Phys. 2015 Jun 28;142(24):245101. doi: 10.1063/1.4922925. J Chem Phys. 2015. PMID: 26133456

5

Evolutionary Conserved Positions Define Protein Conformational Diversity.

Saldaño TE, Monzon AM, Parisi G, Fernandez-Alberti S. Saldaño TE, et al. PLoS Comput Biol. 2016 Mar 23;12(3):e1004775. doi: 10.1371/journal.pcbi.1004775. eCollection 2016 Mar. PLoS Comput Biol. 2016. PMID: 27008419 Free PMC article.

6

Evaluating the effect of mutations and ligand binding on transthyretin homotetramer dynamics.

Saldaño TE, Zanotti G, Parisi G, Fernandez-Alberti S. Saldaño TE, et al. PLoS One. 2017 Jul 13;12(7):e0181019. doi: 10.1371/journal.pone.0181019. eCollection 2017. PLoS One. 2017. PMID: 28704493 Free PMC article.

7

Pockets as structural descriptors of EGFR kinase conformations.

Hasenahuer MA, Barletta GP, Fernandez-Alberti S, Parisi G, Fornasari MS. Hasenahuer MA, et al. PLoS One. 2017 Dec 11;12(12):e0189147. doi: 10.1371/journal.pone.0189147. eCollection 2017. PLoS One. 2017. PMID: 29228029 Free PMC article.

8

Structural and dynamics evidence for scaffold asymmetric flexibility of the human transthyretin tetramer.

Zanotti G, Vallese F, Ferrari A, Menozzi I, Saldaño TE, Berto P, Fernandez-Alberti S, Berni R. Zanotti G, et al. PLoS One. 2017 Dec 14;12(12):e0187716. doi: 10.1371/journal.pone.0187716. eCollection 2017. PLoS One. 2017. PMID: 29240759 Free PMC article.

9

Correction: Pockets as structural descriptors of EGFR kinase conformations.

Hasenahuer MA, Barletta GP, Fernandez-Alberti S, Parisi G, Fornasari MS. Hasenahuer MA, et al. PLoS One. 2018 Feb 8;13(2):e0192815. doi: 10.1371/journal.pone.0192815. eCollection 2018. PLoS One. 2018. PMID: 29420635 Free PMC article.

10

Dynamics fingerprints of active conformers of epidermal growth factor receptor kinase.

Barletta GP, Hasenahuer MA, Fornasari MS, Parisi G, Fernandez-Alberti S. Barletta GP, et al. J Comput Chem. 2018 Nov 5;39(29):2472-2480. doi: 10.1002/jcc.25590. Epub 2018 Oct 9. J Comput Chem. 2018. PMID: 30298935

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