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Page 1
Patterns and processes of Mycobacterium bovis evolution revealed by phylogenomic analyses.
Patané JS, Martins J, Beatriz Castelão A, Nishibe C, Montera L, Bigi F, Zumárraga MJ, Cataldi AA, Fonseca Junior A, Roxo E, Luiza A, Osório AR, Jorge Ufms KS, Thacker TC, Almeida NF, Araújo FR, Setubal JC. Patané JS, et al. Among authors: setubal jc. Genome Biol Evol. 2017 Feb 13;9(3):521-35. doi: 10.1093/gbe/evx022. Online ahead of print. Genome Biol Evol. 2017. PMID: 28201585 Free PMC article.
Comparative genomics analyses of citrus-associated bacteria.
Moreira LM, de Souza RF, Almeida NF Jr, Setubal JC, Oliveira JC, Furlan LR, Ferro JA, da Silva AC. Moreira LM, et al. Among authors: setubal jc. Annu Rev Phytopathol. 2004;42:163-84. doi: 10.1146/annurev.phyto.42.040803.140310. Annu Rev Phytopathol. 2004. PMID: 15283664 Review.
Phylogenomics of Xanthomonas field strains infecting pepper and tomato reveals diversity in effector repertoires and identifies determinants of host specificity.
Schwartz AR, Potnis N, Timilsina S, Wilson M, Patané J, Martins J Jr, Minsavage GV, Dahlbeck D, Akhunova A, Almeida N, Vallad GE, Barak JD, White FF, Miller SA, Ritchie D, Goss E, Bart RS, Setubal JC, Jones JB, Staskawicz BJ. Schwartz AR, et al. Among authors: setubal jc. Front Microbiol. 2015 Jun 3;6:535. doi: 10.3389/fmicb.2015.00535. eCollection 2015. Front Microbiol. 2015. PMID: 26089818 Free PMC article.
TabPath: interactive tables for metabolic pathway analysis.
Moraes LÂG, Felestrino ÉB, Assis RAB, Matos D, Lima JC, Lima LA, Almeida NF, Setubal JC, Garcia CCM, Moreira LM. Moraes LÂG, et al. Among authors: setubal jc. Bioinformatics. 2018 Mar 15;34(6):1040-1042. doi: 10.1093/bioinformatics/btx714. Bioinformatics. 2018. PMID: 29112698
Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae.
Assis RAB, Polloni LC, Patané JSL, Thakur S, Felestrino ÉB, Diaz-Caballero J, Digiampietri LA, Goulart LR, Almeida NF, Nascimento R, Dandekar AM, Zaini PA, Setubal JC, Guttman DS, Moreira LM. Assis RAB, et al. Among authors: setubal jc. Sci Rep. 2017 Nov 23;7(1):16133. doi: 10.1038/s41598-017-16325-1. Sci Rep. 2017. PMID: 29170530 Free PMC article.
Comparative Genomics for Prokaryotes.
Setubal JC, Almeida NF, Wattam AR. Setubal JC, et al. Methods Mol Biol. 2018;1704:55-78. doi: 10.1007/978-1-4939-7463-4_3. Methods Mol Biol. 2018. PMID: 29277863 Review.
Phylogenomics.
Patané JSL, Martins J Jr, Setubal JC. Patané JSL, et al. Among authors: setubal jc. Methods Mol Biol. 2018;1704:103-187. doi: 10.1007/978-1-4939-7463-4_5. Methods Mol Biol. 2018. PMID: 29277865 Review.
Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses.
Patané JSL, Martins J Jr, Rangel LT, Belasque J, Digiampietri LA, Facincani AP, Ferreira RM, Jaciani FJ, Zhang Y, Varani AM, Almeida NF, Wang N, Ferro JA, Moreira LM, Setubal JC. Patané JSL, et al. Among authors: setubal jc. BMC Genomics. 2019 Sep 9;20(1):700. doi: 10.1186/s12864-019-6007-4. BMC Genomics. 2019. PMID: 31500575 Free PMC article.
172 results