Dandekar T - Search Results

1

A Staphylococcus aureus Proteome Overview: Shared and Specific Proteins and Protein Complexes from Representative Strains of All Three Clades.

Liang C, Schaack D, Srivastava M, Gupta SK, Sarukhanyan E, Giese A, Pagels M, Romanov N, Pané-Farré J, Fuchs S, Dandekar T. Liang C, et al. Among authors: dandekar t. Proteomes. 2016 Feb 19;4(1):8. doi: 10.3390/proteomes4010008. Proteomes. 2016. PMID: 28248218 Free PMC article.

2

inGeno--an integrated genome and ortholog viewer for improved genome to genome comparisons.

Liang C, Dandekar T. Liang C, et al. Among authors: dandekar t. BMC Bioinformatics. 2006 Oct 20;7:461. doi: 10.1186/1471-2105-7-461. BMC Bioinformatics. 2006. PMID: 17054788 Free PMC article.

3

Integrated network reconstruction, visualization and analysis using YANAsquare.

Schwarz R, Liang C, Kaleta C, Kühnel M, Hoffmann E, Kuznetsov S, Hecker M, Griffiths G, Schuster S, Dandekar T. Schwarz R, et al. Among authors: dandekar t. BMC Bioinformatics. 2007 Aug 28;8:313. doi: 10.1186/1471-2105-8-313. BMC Bioinformatics. 2007. PMID: 17725829 Free PMC article.

4

Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades.

Förster F, Liang C, Shkumatov A, Beisser D, Engelmann JC, Schnölzer M, Frohme M, Müller T, Schill RO, Dandekar T. Förster F, et al. Among authors: dandekar t. BMC Genomics. 2009 Oct 12;10:469. doi: 10.1186/1471-2164-10-469. BMC Genomics. 2009. PMID: 19821996 Free PMC article.

5

JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes.

Liang C, Schmid A, López-Sánchez MJ, Moya A, Gross R, Bernhardt J, Dandekar T. Liang C, et al. Among authors: dandekar t. BMC Bioinformatics. 2009 Nov 29;10:391. doi: 10.1186/1471-2105-10-391. BMC Bioinformatics. 2009. PMID: 19943962 Free PMC article.

6

Protecs, a comprehensive and powerful storage and analysis system for OMICS data, applied for profiling the anaerobiosis response of Staphylococcus aureus COL.

Fuchs S, Mehlan H, Kusch H, Teumer A, Zühlke D, Berth M, Wolf C, Dandekar T, Hecker M, Engelmann S, Bernhardt J. Fuchs S, et al. Among authors: dandekar t. Proteomics. 2010 Aug;10(16):2982-3000. doi: 10.1002/pmic.200900388. Proteomics. 2010. PMID: 20662099

7

A metabolomics and proteomics study of the adaptation of Staphylococcus aureus to glucose starvation.

Liebeke M, Dörries K, Zühlke D, Bernhardt J, Fuchs S, Pané-Farré J, Engelmann S, Völker U, Bode R, Dandekar T, Lindequist U, Hecker M, Lalk M. Liebeke M, et al. Among authors: dandekar t. Mol Biosyst. 2011 Apr;7(4):1241-53. doi: 10.1039/c0mb00315h. Epub 2011 Feb 16. Mol Biosyst. 2011. PMID: 21327190

8

Modeling antibiotic and cytotoxic effects of the dimeric isoquinoline IQ-143 on metabolism and its regulation in Staphylococcus aureus, Staphylococcus epidermidis and human cells.

Cecil A, Rikanović C, Ohlsen K, Liang C, Bernhardt J, Oelschlaeger TA, Gulder T, Bringmann G, Holzgrabe U, Unger M, Dandekar T. Cecil A, et al. Among authors: dandekar t. Genome Biol. 2011;12(3):R24. doi: 10.1186/gb-2011-12-3-r24. Epub 2011 Mar 21. Genome Biol. 2011. PMID: 21418624 Free PMC article.

9

Immune response of the ant Camponotus floridanus against pathogens and its obligate mutualistic endosymbiont.

Ratzka C, Liang C, Dandekar T, Gross R, Feldhaar H. Ratzka C, et al. Among authors: dandekar t. Insect Biochem Mol Biol. 2011 Aug;41(8):529-36. doi: 10.1016/j.ibmb.2011.03.002. Epub 2011 Mar 30. Insect Biochem Mol Biol. 2011. PMID: 21440063

10

Staphylococcus aureus physiological growth limitations: insights from flux calculations built on proteomics and external metabolite data.

Liang C, Liebeke M, Schwarz R, Zühlke D, Fuchs S, Menschner L, Engelmann S, Wolz C, Jaglitz S, Bernhardt J, Hecker M, Lalk M, Dandekar T. Liang C, et al. Among authors: dandekar t. Proteomics. 2011 May;11(10):1915-35. doi: 10.1002/pmic.201000151. Epub 2011 Apr 7. Proteomics. 2011. PMID: 21472852

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